Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23650 and PS417_23655 are separated by 144 nucleotides PS417_23655 and PS417_23660 are separated by 104 nucleotides
PS417_23650: PS417_23650 - Kynureninase (EC 3.7.1.3) <small>(from data)</small>, at 5,114,613 to 5,115,863
_23650
PS417_23655: PS417_23655 - AsnC family transcriptional regulator, at 5,116,008 to 5,116,481
_23655
PS417_23660: PS417_23660 - Catechol 1,2-dioxygenase (EC 1.13.11.1) <small>(from data)</small>, at 5,116,586 to 5,117,515
_23660
Position (kb) 5116
5117 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5115.032 kb on - strand at 5115.058 kb on + strand, within PS417_23650 at 5115.059 kb on - strand at 5115.181 kb on + strand, within PS417_23650 at 5115.181 kb on + strand, within PS417_23650 at 5115.182 kb on - strand, within PS417_23650 at 5115.188 kb on - strand, within PS417_23650 at 5115.319 kb on + strand, within PS417_23650 at 5115.319 kb on + strand, within PS417_23650 at 5115.319 kb on + strand, within PS417_23650 at 5115.319 kb on + strand, within PS417_23650 at 5115.325 kb on + strand, within PS417_23650 at 5115.326 kb on - strand, within PS417_23650 at 5115.326 kb on - strand at 5115.463 kb on + strand, within PS417_23650 at 5115.464 kb on - strand, within PS417_23650 at 5115.570 kb on - strand, within PS417_23650 at 5115.678 kb on - strand, within PS417_23650 at 5115.772 kb on + strand at 5115.773 kb on - strand at 5115.886 kb on + strand at 5115.956 kb on - strand at 5116.003 kb on + strand at 5116.299 kb on + strand, within PS417_23655 at 5116.300 kb on - strand, within PS417_23655 at 5116.323 kb on + strand, within PS417_23655 at 5116.323 kb on + strand, within PS417_23655 at 5116.323 kb on + strand, within PS417_23655 at 5116.323 kb on + strand, within PS417_23655 at 5116.323 kb on + strand, within PS417_23655 at 5116.324 kb on - strand, within PS417_23655 at 5116.324 kb on - strand, within PS417_23655 at 5116.324 kb on - strand, within PS417_23655 at 5116.410 kb on - strand, within PS417_23655 at 5116.411 kb on + strand, within PS417_23655 at 5116.411 kb on + strand, within PS417_23655 at 5116.411 kb on + strand, within PS417_23655 at 5116.411 kb on + strand, within PS417_23655 at 5116.412 kb on - strand, within PS417_23655 at 5116.528 kb on + strand at 5116.529 kb on - strand at 5116.587 kb on + strand at 5117.029 kb on - strand, within PS417_23660 at 5117.029 kb on - strand, within PS417_23660 at 5117.029 kb on - strand, within PS417_23660 at 5117.032 kb on + strand, within PS417_23660 at 5117.187 kb on + strand, within PS417_23660 at 5117.187 kb on + strand, within PS417_23660 at 5117.187 kb on + strand, within PS417_23660 at 5117.188 kb on - strand, within PS417_23660 at 5117.188 kb on - strand, within PS417_23660 at 5117.188 kb on - strand, within PS417_23660 at 5117.188 kb on - strand, within PS417_23660 at 5117.268 kb on + strand, within PS417_23660 at 5117.269 kb on - strand, within PS417_23660 at 5117.322 kb on - strand, within PS417_23660 at 5117.334 kb on + strand at 5117.335 kb on - strand, within PS417_23660 at 5117.335 kb on - strand, within PS417_23660 at 5117.335 kb on - strand, within PS417_23660 at 5117.335 kb on - strand, within PS417_23660
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,115,032 - +2.9 5,115,058 + PS417_23650 0.36 -0.0 5,115,059 - -0.6 5,115,181 + PS417_23650 0.45 -0.2 5,115,181 + PS417_23650 0.45 -0.9 5,115,182 - PS417_23650 0.45 +0.4 5,115,188 - PS417_23650 0.46 +0.1 5,115,319 + PS417_23650 0.56 -0.6 5,115,319 + PS417_23650 0.56 -1.0 5,115,319 + PS417_23650 0.56 -0.6 5,115,319 + PS417_23650 0.56 +0.1 5,115,325 + PS417_23650 0.57 -0.3 5,115,326 - PS417_23650 0.57 +0.8 5,115,326 - -0.9 5,115,463 + PS417_23650 0.68 -0.2 5,115,464 - PS417_23650 0.68 +0.2 5,115,570 - PS417_23650 0.76 -0.4 5,115,678 - PS417_23650 0.85 -0.7 5,115,772 + -1.4 5,115,773 - -2.3 5,115,886 + -0.5 5,115,956 - -1.6 5,116,003 + -1.3 5,116,299 + PS417_23655 0.61 -1.4 5,116,300 - PS417_23655 0.62 -0.7 5,116,323 + PS417_23655 0.66 -1.4 5,116,323 + PS417_23655 0.66 +0.3 5,116,323 + PS417_23655 0.66 -0.3 5,116,323 + PS417_23655 0.66 -1.1 5,116,323 + PS417_23655 0.66 -0.6 5,116,324 - PS417_23655 0.67 -0.0 5,116,324 - PS417_23655 0.67 -0.9 5,116,324 - PS417_23655 0.67 -2.3 5,116,410 - PS417_23655 0.85 -0.1 5,116,411 + PS417_23655 0.85 +1.2 5,116,411 + PS417_23655 0.85 -1.6 5,116,411 + PS417_23655 0.85 -0.5 5,116,411 + PS417_23655 0.85 -2.1 5,116,412 - PS417_23655 0.85 +0.4 5,116,528 + +0.5 5,116,529 - -0.5 5,116,587 + +1.4 5,117,029 - PS417_23660 0.48 +1.0 5,117,029 - PS417_23660 0.48 +0.0 5,117,029 - PS417_23660 0.48 +0.0 5,117,032 + PS417_23660 0.48 +0.3 5,117,187 + PS417_23660 0.65 +0.4 5,117,187 + PS417_23660 0.65 -0.4 5,117,187 + PS417_23660 0.65 +1.0 5,117,188 - PS417_23660 0.65 -0.7 5,117,188 - PS417_23660 0.65 -0.1 5,117,188 - PS417_23660 0.65 +0.1 5,117,188 - PS417_23660 0.65 +0.2 5,117,268 + PS417_23660 0.73 -0.2 5,117,269 - PS417_23660 0.73 -0.6 5,117,322 - PS417_23660 0.79 -0.2 5,117,334 + +0.4 5,117,335 - PS417_23660 0.81 +0.6 5,117,335 - PS417_23660 0.81 -2.3 5,117,335 - PS417_23660 0.81 -0.6 5,117,335 - PS417_23660 0.81 +2.4
Or see this region's nucleotide sequence