Strain Fitness in Pseudomonas simiae WCS417 around PS417_20180

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
4,383,875	+		PS417_20175	0.14	+1.8
4,383,912	+		PS417_20175	0.18	-0.5
4,383,913	-		PS417_20175	0.18	-2.1
4,383,913	-		PS417_20175	0.18	-0.6
4,383,936	+		PS417_20175	0.21	+0.4
4,383,936	+		PS417_20175	0.21	+0.2
4,383,936	+		PS417_20175	0.21	-0.2
4,383,936	+		PS417_20175	0.21	+0.3
4,383,937	-		PS417_20175	0.21	+0.2
4,383,937	-		PS417_20175	0.21	-0.7
4,383,937	-		PS417_20175	0.21	+0.7
4,383,973	+		PS417_20175	0.25	-1.8
4,383,974	-		PS417_20175	0.25	+0.2
4,383,974	-		PS417_20175	0.25	+0.3
4,384,119	+		PS417_20175	0.41	+0.5
4,384,120	-		PS417_20175	0.41	+0.4
4,384,152	+		PS417_20175	0.45	-0.0
4,384,152	+		PS417_20175	0.45	+1.3
4,384,152	+		PS417_20175	0.45	-0.2
4,384,152	+		PS417_20175	0.45	-0.0
4,384,153	-		PS417_20175	0.45	+2.6
4,384,153	-		PS417_20175	0.45	+1.0
4,384,262	+		PS417_20175	0.57	+1.0
4,384,285	-		PS417_20175	0.60	+0.6
4,384,390	-		PS417_20175	0.71	+0.1
4,384,527	+		PS417_20175	0.87	-0.6
4,384,527	+		PS417_20175	0.87	+1.6
4,384,527	+		PS417_20175	0.87	+0.0
4,384,527	+		PS417_20175	0.87	+0.0
4,384,528	-		PS417_20175	0.87	+2.5
4,384,528	-		PS417_20175	0.87	+1.6
4,384,677	-				-0.0
4,384,677	-				-0.3
4,384,689	+				-1.2
4,384,689	+				-2.3
4,384,709	+				-1.2
4,384,710	-				+0.7
4,384,710	-				+0.3
4,385,005	+		PS417_20180	0.22	-0.9
4,385,005	+		PS417_20180	0.22	-0.0
4,385,077	-		PS417_20180	0.30	-0.4
4,385,265	+		PS417_20180	0.49	-0.8
4,385,265	+		PS417_20180	0.49	-1.8
4,385,266	-		PS417_20180	0.50	-2.6
4,385,266	-		PS417_20180	0.50	+0.2
4,385,312	+		PS417_20180	0.54	+0.8
4,385,372	-		PS417_20180	0.61	+0.6
4,385,501	-		PS417_20180	0.74	-2.0
4,385,501	-		PS417_20180	0.74	-0.5
4,385,501	-		PS417_20180	0.74	-0.5
4,385,856	+		PS417_20185	0.26	-0.2
4,385,856	+		PS417_20185	0.26	+0.1
4,385,857	-		PS417_20185	0.26	-1.2
4,385,893	-		PS417_20185	0.35	+0.7
4,386,194	+				+0.9
4,386,194	+				+0.0
4,386,197	+				-0.7
4,386,198	-				+0.1
4,386,209	+				-1.2
4,386,209	+				+0.1
4,386,209	+				-0.1
4,386,210	-				+1.1
4,386,216	-				+0.3
4,386,227	-				-3.3
4,386,267	-				+0.1
4,386,314	+				-1.7
4,386,401	-		PS417_20190	0.14	-0.1
4,386,401	-		PS417_20190	0.14	-1.8