Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01330 and PS417_01335 are separated by 151 nucleotides PS417_01335 and PS417_01340 are separated by 121 nucleotides
PS417_01330: PS417_01330 - dTDP-glucose 4,6-dehydratase, at 287,741 to 288,823
_01330
PS417_01335: PS417_01335 - hypothetical protein, at 288,975 to 291,875
_01335
PS417_01340: PS417_01340 - agmatine deiminase, at 291,997 to 293,103
_01340
Position (kb) 288
289
290
291
292 Strain fitness (log2 ratio) -2
-1
0
1 at 288.868 kb on + strand at 288.868 kb on + strand at 288.869 kb on - strand at 288.945 kb on + strand at 288.946 kb on - strand at 288.946 kb on - strand at 288.946 kb on - strand at 289.009 kb on + strand at 289.063 kb on - strand at 289.114 kb on - strand at 289.114 kb on - strand at 289.114 kb on - strand at 289.209 kb on - strand at 289.314 kb on + strand, within PS417_01335 at 289.315 kb on - strand, within PS417_01335 at 289.315 kb on - strand, within PS417_01335 at 289.951 kb on + strand, within PS417_01335 at 289.951 kb on + strand, within PS417_01335 at 289.952 kb on - strand, within PS417_01335 at 290.288 kb on + strand, within PS417_01335 at 290.321 kb on - strand, within PS417_01335 at 290.321 kb on - strand, within PS417_01335 at 290.646 kb on + strand, within PS417_01335 at 290.715 kb on + strand, within PS417_01335 at 291.136 kb on - strand, within PS417_01335 at 291.216 kb on + strand, within PS417_01335 at 291.217 kb on - strand, within PS417_01335 at 291.267 kb on + strand, within PS417_01335 at 291.268 kb on - strand, within PS417_01335 at 291.332 kb on + strand, within PS417_01335 at 291.386 kb on + strand, within PS417_01335 at 291.386 kb on + strand, within PS417_01335 at 291.387 kb on - strand, within PS417_01335 at 291.387 kb on - strand at 291.387 kb on - strand, within PS417_01335 at 291.435 kb on - strand, within PS417_01335 at 291.475 kb on - strand, within PS417_01335 at 291.871 kb on + strand at 291.873 kb on + strand at 291.873 kb on + strand at 291.874 kb on - strand at 291.874 kb on - strand at 292.723 kb on + strand, within PS417_01340 at 292.723 kb on + strand, within PS417_01340 at 292.724 kb on - strand, within PS417_01340 at 292.798 kb on - strand, within PS417_01340 at 292.798 kb on - strand, within PS417_01340 at 292.822 kb on + strand, within PS417_01340
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 288,868 + +1.4 288,868 + +0.6 288,869 - -0.6 288,945 + -1.1 288,946 - +0.3 288,946 - +0.2 288,946 - -0.8 289,009 + +0.9 289,063 - -1.6 289,114 - -1.2 289,114 - +0.4 289,114 - -0.9 289,209 - -0.3 289,314 + PS417_01335 0.12 +0.4 289,315 - PS417_01335 0.12 -0.5 289,315 - PS417_01335 0.12 -0.4 289,951 + PS417_01335 0.34 -0.5 289,951 + PS417_01335 0.34 +0.7 289,952 - PS417_01335 0.34 +0.1 290,288 + PS417_01335 0.45 +0.9 290,321 - PS417_01335 0.46 -0.2 290,321 - PS417_01335 0.46 +0.6 290,646 + PS417_01335 0.58 -1.4 290,715 + PS417_01335 0.60 -1.3 291,136 - PS417_01335 0.74 -0.6 291,216 + PS417_01335 0.77 -0.6 291,217 - PS417_01335 0.77 -0.9 291,267 + PS417_01335 0.79 +0.1 291,268 - PS417_01335 0.79 -0.5 291,332 + PS417_01335 0.81 +0.1 291,386 + PS417_01335 0.83 -0.1 291,386 + PS417_01335 0.83 -2.1 291,387 - PS417_01335 0.83 +0.1 291,387 - +1.1 291,387 - PS417_01335 0.83 -1.1 291,435 - PS417_01335 0.85 +0.3 291,475 - PS417_01335 0.86 +0.3 291,871 + +0.5 291,873 + -0.6 291,873 + -1.0 291,874 - +0.1 291,874 - -2.6 292,723 + PS417_01340 0.66 -1.2 292,723 + PS417_01340 0.66 -2.5 292,724 - PS417_01340 0.66 -0.7 292,798 - PS417_01340 0.72 -1.0 292,798 - PS417_01340 0.72 -0.0 292,822 + PS417_01340 0.75 +0.5
Or see this region's nucleotide sequence