Strain Fitness in Pseudomonas simiae WCS417 around PS417_01135

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01130 and PS417_01135 are separated by 128 nucleotidesPS417_01135 and PS417_01140 are separated by 14 nucleotidesPS417_01140 and PS417_01145 overlap by 4 nucleotides PS417_01130: PS417_01130 - L-glyceraldehyde 3-phosphate reductase, at 248,666 to 249,703 _01130 PS417_01135: PS417_01135 - taurine dioxygenase, at 249,832 to 250,668 _01135 PS417_01140: PS417_01140 - taurine ABC transporter permease, at 250,683 to 251,519 _01140 PS417_01145: PS417_01145 - taurine transporter ATP-binding subunit, at 251,516 to 252,295 _01145 Position (kb) 249 250 251Strain fitness (log2 ratio) -2 -1 0 1 2at 248.861 kb on + strand, within PS417_01130at 248.862 kb on - strand, within PS417_01130at 249.011 kb on + strand, within PS417_01130at 249.011 kb on + strand, within PS417_01130at 249.011 kb on + strand, within PS417_01130at 249.254 kb on + strand, within PS417_01130at 249.365 kb on + strand, within PS417_01130at 249.365 kb on + strand, within PS417_01130at 249.691 kb on + strandat 249.692 kb on - strandat 249.692 kb on - strandat 249.809 kb on + strandat 249.810 kb on - strandat 249.841 kb on + strandat 249.842 kb on - strandat 249.842 kb on - strandat 249.842 kb on - strandat 250.053 kb on + strand, within PS417_01135at 250.054 kb on - strand, within PS417_01135at 250.268 kb on + strand, within PS417_01135at 250.269 kb on - strand, within PS417_01135at 250.426 kb on + strand, within PS417_01135at 250.427 kb on - strand, within PS417_01135at 250.454 kb on + strand, within PS417_01135at 250.651 kb on - strandat 250.668 kb on + strandat 250.669 kb on - strandat 250.771 kb on - strand, within PS417_01140at 250.771 kb on - strand, within PS417_01140at 251.146 kb on + strand, within PS417_01140at 251.623 kb on - strand, within PS417_01145

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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248,861 + PS417_01130 0.19 -0.5
248,862 - PS417_01130 0.19 +2.3
249,011 + PS417_01130 0.33 -2.5
249,011 + PS417_01130 0.33 -0.7
249,011 + PS417_01130 0.33 +1.3
249,254 + PS417_01130 0.57 -0.1
249,365 + PS417_01130 0.67 -1.0
249,365 + PS417_01130 0.67 +1.4
249,691 + -1.0
249,692 - -0.3
249,692 - +0.7
249,809 + -0.1
249,810 - -0.7
249,841 + +0.4
249,842 - +2.7
249,842 - +1.4
249,842 - -0.1
250,053 + PS417_01135 0.26 +1.4
250,054 - PS417_01135 0.27 +1.9
250,268 + PS417_01135 0.52 -0.4
250,269 - PS417_01135 0.52 -2.7
250,426 + PS417_01135 0.71 -0.1
250,427 - PS417_01135 0.71 -2.7
250,454 + PS417_01135 0.74 +2.6
250,651 - +1.4
250,668 + -0.1
250,669 - -0.2
250,771 - PS417_01140 0.11 -0.8
250,771 - PS417_01140 0.11 +0.6
251,146 + PS417_01140 0.55 -0.1
251,623 - PS417_01145 0.14 +0.2

Or see this region's nucleotide sequence