Strain Fitness in Pseudomonas simiae WCS417 around PS417_01135
Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Polymyxin B sulfate 0.003 mg/ml |
---|---|---|---|---|---|
remove | |||||
248,861 | + | PS417_01130 | 0.19 | -0.5 | |
248,862 | - | PS417_01130 | 0.19 | +2.3 | |
249,011 | + | PS417_01130 | 0.33 | -2.5 | |
249,011 | + | PS417_01130 | 0.33 | -0.7 | |
249,011 | + | PS417_01130 | 0.33 | +1.3 | |
249,254 | + | PS417_01130 | 0.57 | -0.1 | |
249,365 | + | PS417_01130 | 0.67 | -1.0 | |
249,365 | + | PS417_01130 | 0.67 | +1.4 | |
249,691 | + | -1.0 | |||
249,692 | - | -0.3 | |||
249,692 | - | +0.7 | |||
249,809 | + | -0.1 | |||
249,810 | - | -0.7 | |||
249,841 | + | +0.4 | |||
249,842 | - | +2.7 | |||
249,842 | - | +1.4 | |||
249,842 | - | -0.1 | |||
250,053 | + | PS417_01135 | 0.26 | +1.4 | |
250,054 | - | PS417_01135 | 0.27 | +1.9 | |
250,268 | + | PS417_01135 | 0.52 | -0.4 | |
250,269 | - | PS417_01135 | 0.52 | -2.7 | |
250,426 | + | PS417_01135 | 0.71 | -0.1 | |
250,427 | - | PS417_01135 | 0.71 | -2.7 | |
250,454 | + | PS417_01135 | 0.74 | +2.6 | |
250,651 | - | +1.4 | |||
250,668 | + | -0.1 | |||
250,669 | - | -0.2 | |||
250,771 | - | PS417_01140 | 0.11 | -0.8 | |
250,771 | - | PS417_01140 | 0.11 | +0.6 | |
251,146 | + | PS417_01140 | 0.55 | -0.1 | |
251,623 | - | PS417_01145 | 0.14 | +0.2 |
Or see this region's nucleotide sequence