Strain Fitness in Pseudomonas simiae WCS417 around PS417_09845

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
2,131,949	+		PS417_09835	0.39	+2.1
2,131,949	+		PS417_09835	0.39	+0.5
2,131,949	+		PS417_09835	0.39	-0.3
2,131,953	-		PS417_09835	0.41	-1.2
2,132,075	+		PS417_09835	0.74	+0.2
2,132,103	-		PS417_09835	0.82	-0.1
2,132,166	+				+1.0
2,132,166	+				+0.3
2,132,166	+				+0.3
2,132,167	-				+0.6
2,132,167	-				-0.4
2,132,299	-				-0.9
2,132,327	-				+0.3
2,132,327	-				+0.2
2,132,327	-				-0.2
2,132,375	+				-0.7
2,132,375	+				-0.1
2,132,375	+				-0.2
2,132,376	-				-0.1
2,132,398	-				-0.4
2,132,462	+		PS417_09840	0.22	+0.7
2,132,473	+		PS417_09840	0.25	+0.2
2,132,479	+		PS417_09840	0.27	-0.6
2,132,480	-		PS417_09840	0.27	-0.6
2,132,480	-				+0.6
2,132,480	-		PS417_09840	0.27	+0.5
2,132,485	+		PS417_09840	0.28	-0.0
2,132,485	+		PS417_09840	0.28	+0.3
2,132,486	-		PS417_09840	0.28	+0.9
2,132,597	+		PS417_09840	0.55	-0.3
2,132,597	+		PS417_09840	0.55	+0.6
2,132,598	-		PS417_09840	0.55	-0.4
2,132,703	+		PS417_09840	0.81	+0.1
2,132,704	-		PS417_09840	0.81	-0.0
2,132,704	-		PS417_09840	0.81	+0.0
2,132,704	-		PS417_09840	0.81	-0.7
2,132,721	-		PS417_09840	0.85	-0.9
2,132,721	-		PS417_09840	0.85	+3.5
2,132,737	+		PS417_09840	0.89	+0.4
2,132,737	+				+0.8
2,132,737	+		PS417_09840	0.89	+0.2
2,132,738	-		PS417_09840	0.89	+1.3
2,132,738	-		PS417_09840	0.89	+0.1
2,132,738	-		PS417_09840	0.89	+0.0
2,132,738	-		PS417_09840	0.89	-0.3
2,132,780	+				-0.1
2,132,859	-				+0.8
2,132,859	-				-1.9
2,132,867	+				+3.0
2,132,901	+				-0.7
2,132,901	+				-1.1
2,132,902	-				-0.2
2,132,905	+				+0.0
2,133,178	+		PS417_09845	0.29	+0.1
2,133,178	+		PS417_09845	0.29	-0.2
2,133,178	+		PS417_09845	0.29	+0.7
2,133,179	-		PS417_09845	0.29	+0.8
2,133,196	-				-2.2
2,133,258	+		PS417_09845	0.38	-0.2
2,133,259	-		PS417_09845	0.38	+0.2
2,133,381	+		PS417_09845	0.52	+0.1
2,133,656	-				-1.2
2,133,656	-		PS417_09845	0.84	+0.5
2,133,868	+				-0.9
2,133,900	+				+1.3
2,133,900	+				-0.6
2,133,905	-				+1.6
2,133,905	-				+0.6
2,133,957	+				-2.0
2,133,985	+				+1.0
2,133,985	+				+0.4
2,133,986	-				+1.2
2,133,986	-				-1.5
2,133,986	-				+0.1
2,134,133	+		PS417_09850	0.10	+1.4
2,134,133	+		PS417_09850	0.10	+0.5
2,134,134	-		PS417_09850	0.10	+0.8
2,134,135	+		PS417_09850	0.10	+1.0
2,134,135	+		PS417_09850	0.10	+0.3
2,134,135	+		PS417_09850	0.10	+0.1
2,134,135	+		PS417_09850	0.10	-3.9
2,134,136	-		PS417_09850	0.10	+0.1
2,134,136	-		PS417_09850	0.10	+1.1
2,134,136	-		PS417_09850	0.10	-0.8
2,134,136	-		PS417_09850	0.10	-0.8
2,134,266	+		PS417_09850	0.19	-0.1
2,134,267	-		PS417_09850	0.19	+0.5
2,134,267	-		PS417_09850	0.19	+4.0
2,134,413	-		PS417_09850	0.28	+0.7
2,134,460	+		PS417_09850	0.31	-0.1
2,134,537	-		PS417_09850	0.36	-0.1
2,134,606	+		PS417_09850	0.40	+0.0
2,134,607	-		PS417_09850	0.40	+0.7
2,134,641	+		PS417_09850	0.42	-2.8
2,134,666	+		PS417_09850	0.44	-2.3
2,134,746	-		PS417_09850	0.49	+0.3