Strain Fitness in Pseudomonas simiae WCS417 around PS417_07175
Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Polymyxin B sulfate 0.003 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,584,185 | + | PS417_07170 | 0.11 | -2.1 | |
1,584,288 | + | PS417_07170 | 0.20 | -2.5 | |
1,584,545 | - | PS417_07170 | 0.43 | -1.9 | |
1,584,599 | + | PS417_07170 | 0.48 | +0.1 | |
1,584,615 | + | PS417_07170 | 0.50 | -1.8 | |
1,584,781 | - | PS417_07170 | 0.65 | -0.9 | |
1,584,908 | - | PS417_07170 | 0.76 | -2.4 | |
1,584,908 | - | PS417_07170 | 0.76 | -1.4 | |
1,584,937 | - | PS417_07170 | 0.79 | -1.6 | |
1,584,940 | - | PS417_07170 | 0.79 | -0.2 | |
1,585,072 | + | -0.9 | |||
1,585,246 | + | -0.2 | |||
1,585,246 | + | -1.8 | |||
1,585,246 | + | -0.0 | |||
1,585,246 | + | +0.2 | |||
1,585,247 | - | -0.3 | |||
1,585,408 | + | PS417_07175 | 0.30 | -0.2 | |
1,585,408 | + | PS417_07175 | 0.30 | -1.9 | |
1,585,549 | + | PS417_07175 | 0.49 | -0.8 | |
1,585,549 | + | PS417_07175 | 0.49 | -2.1 | |
1,585,549 | + | -1.2 | |||
1,585,549 | + | PS417_07175 | 0.49 | +1.4 | |
1,585,550 | - | PS417_07175 | 0.49 | -1.9 | |
1,585,553 | + | PS417_07175 | 0.49 | +0.5 | |
1,585,553 | + | PS417_07175 | 0.49 | -0.2 | |
1,585,554 | - | PS417_07175 | 0.49 | -1.4 | |
1,585,603 | + | PS417_07175 | 0.56 | -0.6 | |
1,585,769 | - | PS417_07175 | 0.78 | -0.5 | |
1,585,949 | - | -1.2 | |||
1,586,698 | - | +1.0 |
Or see this region's nucleotide sequence