Experiment: Growth at 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3893 and PP_3894 overlap by 4 nucleotides PP_3894 and PP_3895 are separated by 324 nucleotides PP_3895 and PP_3896 are separated by 87 nucleotides
PP_3893: PP_3893 - putative Phage DNA helicase, at 4,408,916 to 4,410,313
_3893
PP_3894: PP_3894 - putative Phage replication protein O, at 4,410,310 to 4,411,140
_3894
PP_3895: PP_3895 - putative Regulatory protein Cro, at 4,411,465 to 4,411,677
_3895
PP_3896: PP_3896 - Transcriptional regulator, Cro/CI family, at 4,411,765 to 4,412,412
_3896
Position (kb) 4410
4411
4412 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4409.370 kb on + strand, within PP_3893 at 4409.370 kb on + strand, within PP_3893 at 4409.370 kb on + strand, within PP_3893 at 4409.371 kb on - strand, within PP_3893 at 4409.371 kb on - strand, within PP_3893 at 4409.371 kb on - strand, within PP_3893 at 4409.371 kb on - strand, within PP_3893 at 4409.371 kb on - strand, within PP_3893 at 4409.468 kb on + strand, within PP_3893 at 4409.468 kb on + strand, within PP_3893 at 4409.468 kb on + strand, within PP_3893 at 4409.468 kb on + strand, within PP_3893 at 4409.469 kb on - strand, within PP_3893 at 4409.469 kb on - strand, within PP_3893 at 4409.564 kb on - strand, within PP_3893 at 4409.662 kb on - strand, within PP_3893 at 4409.791 kb on + strand, within PP_3893 at 4409.930 kb on - strand, within PP_3893 at 4410.018 kb on + strand, within PP_3893 at 4410.019 kb on - strand, within PP_3893 at 4410.401 kb on + strand, within PP_3894 at 4410.402 kb on - strand, within PP_3894 at 4410.402 kb on - strand, within PP_3894 at 4410.431 kb on + strand, within PP_3894 at 4410.432 kb on - strand, within PP_3894 at 4410.588 kb on - strand, within PP_3894 at 4410.588 kb on - strand, within PP_3894 at 4410.714 kb on + strand, within PP_3894 at 4410.715 kb on - strand, within PP_3894 at 4410.715 kb on - strand, within PP_3894 at 4410.720 kb on + strand, within PP_3894 at 4410.721 kb on - strand, within PP_3894 at 4410.721 kb on - strand, within PP_3894 at 4410.733 kb on + strand, within PP_3894 at 4410.734 kb on - strand, within PP_3894 at 4410.734 kb on - strand, within PP_3894 at 4410.734 kb on - strand, within PP_3894 at 4410.734 kb on - strand, within PP_3894 at 4410.772 kb on + strand, within PP_3894 at 4410.773 kb on - strand, within PP_3894 at 4410.784 kb on - strand, within PP_3894 at 4410.950 kb on + strand, within PP_3894 at 4410.968 kb on + strand, within PP_3894 at 4410.968 kb on + strand, within PP_3894 at 4410.968 kb on + strand, within PP_3894 at 4410.969 kb on - strand, within PP_3894 at 4410.969 kb on - strand, within PP_3894 at 4411.002 kb on - strand, within PP_3894 at 4411.079 kb on + strand at 4411.079 kb on + strand at 4411.079 kb on + strand at 4411.079 kb on + strand at 4411.079 kb on + strand at 4411.080 kb on - strand at 4411.080 kb on - strand at 4411.080 kb on - strand at 4411.080 kb on - strand at 4411.096 kb on - strand at 4411.096 kb on - strand at 4411.217 kb on - strand at 4411.668 kb on + strand at 4411.764 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 10C remove 4,409,370 + PP_3893 0.32 -0.0 4,409,370 + PP_3893 0.32 -0.5 4,409,370 + PP_3893 0.32 +0.9 4,409,371 - PP_3893 0.33 -5.0 4,409,371 - PP_3893 0.33 -3.4 4,409,371 - PP_3893 0.33 -4.4 4,409,371 - PP_3893 0.33 -3.5 4,409,371 - PP_3893 0.33 -4.8 4,409,468 + PP_3893 0.39 +0.5 4,409,468 + PP_3893 0.39 +0.2 4,409,468 + PP_3893 0.39 -0.4 4,409,468 + PP_3893 0.39 +0.2 4,409,469 - PP_3893 0.40 -2.4 4,409,469 - PP_3893 0.40 -3.5 4,409,564 - PP_3893 0.46 -0.0 4,409,662 - PP_3893 0.53 +0.1 4,409,791 + PP_3893 0.63 +0.7 4,409,930 - PP_3893 0.73 -3.2 4,410,018 + PP_3893 0.79 -2.1 4,410,019 - PP_3893 0.79 +1.4 4,410,401 + PP_3894 0.11 -0.4 4,410,402 - PP_3894 0.11 -4.5 4,410,402 - PP_3894 0.11 -4.9 4,410,431 + PP_3894 0.15 +0.5 4,410,432 - PP_3894 0.15 -2.4 4,410,588 - PP_3894 0.33 -2.3 4,410,588 - PP_3894 0.33 -2.4 4,410,714 + PP_3894 0.49 -0.6 4,410,715 - PP_3894 0.49 -0.6 4,410,715 - PP_3894 0.49 +0.3 4,410,720 + PP_3894 0.49 -0.4 4,410,721 - PP_3894 0.49 -0.7 4,410,721 - PP_3894 0.49 +0.7 4,410,733 + PP_3894 0.51 +0.9 4,410,734 - PP_3894 0.51 +0.2 4,410,734 - PP_3894 0.51 -0.2 4,410,734 - PP_3894 0.51 -0.1 4,410,734 - PP_3894 0.51 +0.1 4,410,772 + PP_3894 0.56 +0.8 4,410,773 - PP_3894 0.56 -1.8 4,410,784 - PP_3894 0.57 -0.3 4,410,950 + PP_3894 0.77 +0.1 4,410,968 + PP_3894 0.79 -0.0 4,410,968 + PP_3894 0.79 -0.0 4,410,968 + PP_3894 0.79 -0.6 4,410,969 - PP_3894 0.79 +0.1 4,410,969 - PP_3894 0.79 -0.3 4,411,002 - PP_3894 0.83 -0.6 4,411,079 + -0.4 4,411,079 + +0.8 4,411,079 + +0.9 4,411,079 + +1.3 4,411,079 + +0.9 4,411,080 - -0.9 4,411,080 - +2.2 4,411,080 - -0.2 4,411,080 - -0.6 4,411,096 - -0.5 4,411,096 - -0.2 4,411,217 - -4.2 4,411,668 + -0.5 4,411,764 + +1.6
Or see this region's nucleotide sequence