Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04320 and PS417_04325 are separated by 88 nucleotides PS417_04325 and PS417_04330 are separated by 16 nucleotides PS417_04330 and PS417_04335 are separated by 2 nucleotides PS417_04335 and PS417_04340 are separated by 10 nucleotides PS417_04340 and PS417_04345 are separated by 75 nucleotides
PS417_04320: PS417_04320 - divalent cation transporter, at 968,070 to 968,963
_04320
PS417_04325: PS417_04325 - phosphocarrier protein HPr, at 969,052 to 969,324
_04325
PS417_04330: PS417_04330 - glmZ(sRNA)-inactivating NTPase, at 969,341 to 970,198
_04330
PS417_04335: PS417_04335 - PTS fructose transporter subunit IIA, at 970,201 to 970,665
_04335
PS417_04340: PS417_04340 - ribosome hibernation promoting factor HPF, at 970,676 to 970,981
_04340
PS417_04345: PS417_04345 - RNA polymerase factor sigma-54, at 971,057 to 972,550
_04345
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 968.432 kb on + strand, within PS417_04320 at 968.432 kb on + strand at 968.432 kb on + strand, within PS417_04320 at 968.433 kb on - strand, within PS417_04320 at 968.454 kb on + strand, within PS417_04320 at 968.534 kb on + strand, within PS417_04320 at 968.961 kb on + strand at 968.979 kb on - strand at 968.979 kb on - strand at 969.042 kb on + strand at 969.042 kb on + strand at 969.043 kb on - strand at 969.071 kb on + strand at 969.071 kb on + strand at 969.072 kb on - strand at 969.072 kb on - strand at 969.075 kb on + strand at 969.075 kb on + strand at 969.075 kb on + strand at 969.076 kb on - strand at 969.346 kb on + strand at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.927 kb on - strand, within PS417_04340 at 970.953 kb on - strand at 970.953 kb on - strand at 970.953 kb on - strand at 970.982 kb on - strand at 970.982 kb on - strand at 971.021 kb on - strand at 971.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 968,432 + PS417_04320 0.40 +0.4 968,432 + +0.7 968,432 + PS417_04320 0.40 -0.7 968,433 - PS417_04320 0.41 +0.4 968,454 + PS417_04320 0.43 -0.7 968,534 + PS417_04320 0.52 -0.4 968,961 + +0.3 968,979 - +2.7 968,979 - -0.4 969,042 + -3.3 969,042 + -0.4 969,043 - -1.5 969,071 + +0.3 969,071 + +0.4 969,072 - -1.2 969,072 - +0.2 969,075 + -1.0 969,075 + +0.1 969,075 + -1.1 969,076 - +0.5 969,346 + -1.6 970,771 - PS417_04340 0.31 -3.4 970,771 - PS417_04340 0.31 -2.0 970,771 - PS417_04340 0.31 +0.1 970,771 - PS417_04340 0.31 +0.0 970,771 - PS417_04340 0.31 -0.9 970,771 - PS417_04340 0.31 -1.4 970,771 - PS417_04340 0.31 -1.2 970,771 - PS417_04340 0.31 +1.4 970,771 - PS417_04340 0.31 +0.1 970,771 - PS417_04340 0.31 -0.9 970,927 - PS417_04340 0.82 -1.1 970,953 - -1.2 970,953 - +1.2 970,953 - -3.7 970,982 - -0.4 970,982 - +0.1 971,021 - +0.2 971,027 - -0.6
Or see this region's nucleotide sequence