Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03785 and PS417_03790 overlap by 4 nucleotides PS417_03790 and PS417_03795 are separated by 7 nucleotides PS417_03795 and PS417_03800 are separated by 11 nucleotides PS417_03800 and PS417_03805 are separated by 62 nucleotides
PS417_03785: PS417_03785 - pilus assembly protein PilV, at 856,750 to 857,235
_03785
PS417_03790: PS417_03790 - pilus assembly protein PilW, at 857,232 to 857,939
_03790
PS417_03795: PS417_03795 - pilus assembly protein PilX, at 857,947 to 858,477
_03795
PS417_03800: PS417_03800 - pilus assembly protein, at 858,489 to 858,890
_03800
PS417_03805: PS417_03805 - D-amino acid oxidase, at 858,953 to 860,062
_03805
Position (kb) 857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 857.327 kb on + strand, within PS417_03790 at 857.610 kb on + strand, within PS417_03790 at 857.611 kb on - strand, within PS417_03790 at 857.673 kb on + strand, within PS417_03790 at 857.674 kb on - strand, within PS417_03790 at 857.901 kb on + strand at 857.902 kb on - strand at 857.965 kb on - strand at 857.965 kb on - strand at 858.097 kb on - strand, within PS417_03795 at 858.259 kb on - strand, within PS417_03795 at 858.330 kb on - strand, within PS417_03795 at 858.412 kb on + strand at 858.413 kb on - strand at 858.423 kb on - strand, within PS417_03795 at 858.423 kb on - strand, within PS417_03795 at 858.423 kb on - strand, within PS417_03795 at 858.512 kb on + strand at 858.513 kb on - strand at 858.661 kb on - strand, within PS417_03800 at 858.681 kb on - strand at 858.681 kb on - strand, within PS417_03800 at 858.720 kb on - strand, within PS417_03800 at 858.720 kb on - strand, within PS417_03800 at 858.765 kb on - strand, within PS417_03800 at 858.972 kb on + strand at 859.113 kb on - strand, within PS417_03805 at 859.113 kb on - strand, within PS417_03805 at 859.124 kb on + strand, within PS417_03805 at 859.359 kb on - strand, within PS417_03805 at 859.373 kb on + strand, within PS417_03805 at 859.374 kb on - strand, within PS417_03805
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 857,327 + PS417_03790 0.13 -0.4 857,610 + PS417_03790 0.53 -2.6 857,611 - PS417_03790 0.54 +0.9 857,673 + PS417_03790 0.62 +0.4 857,674 - PS417_03790 0.62 -2.2 857,901 + +0.9 857,902 - +0.2 857,965 - -2.1 857,965 - +0.6 858,097 - PS417_03795 0.28 +0.2 858,259 - PS417_03795 0.59 +1.8 858,330 - PS417_03795 0.72 +1.7 858,412 + +0.8 858,413 - +0.2 858,423 - PS417_03795 0.90 +0.3 858,423 - PS417_03795 0.90 -0.2 858,423 - PS417_03795 0.90 +0.4 858,512 + +0.7 858,513 - -0.4 858,661 - PS417_03800 0.43 -3.1 858,681 - -1.8 858,681 - PS417_03800 0.48 +0.4 858,720 - PS417_03800 0.57 +0.8 858,720 - PS417_03800 0.57 +0.1 858,765 - PS417_03800 0.69 +0.3 858,972 + +0.1 859,113 - PS417_03805 0.14 -1.2 859,113 - PS417_03805 0.14 +0.0 859,124 + PS417_03805 0.15 +2.2 859,359 - PS417_03805 0.37 +0.3 859,373 + PS417_03805 0.38 -0.5 859,374 - PS417_03805 0.38 +1.6
Or see this region's nucleotide sequence