Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02940 and PS417_02945 are separated by 82 nucleotides PS417_02945 and PS417_02950 overlap by 4 nucleotides PS417_02950 and PS417_02955 are separated by 185 nucleotides
PS417_02940: PS417_02940 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 672,256 to 673,863
_02940
PS417_02945: PS417_02945 - Fis family transcriptional regulator, at 673,946 to 674,266
_02945
PS417_02950: PS417_02950 - tRNA-dihydrouridine synthase B, at 674,263 to 675,276
_02950
PS417_02955: PS417_02955 - hypothetical protein, at 675,462 to 676,676
_02955
Position (kb) 674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 674.441 kb on - strand, within PS417_02950 at 674.441 kb on - strand, within PS417_02950 at 674.460 kb on - strand, within PS417_02950 at 675.161 kb on - strand, within PS417_02950 at 675.185 kb on - strand at 675.245 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.277 kb on - strand at 675.277 kb on - strand at 675.307 kb on - strand at 675.491 kb on - strand at 675.503 kb on + strand at 675.533 kb on + strand at 675.534 kb on - strand at 675.691 kb on + strand, within PS417_02955 at 675.691 kb on + strand, within PS417_02955 at 675.691 kb on + strand, within PS417_02955 at 675.692 kb on - strand, within PS417_02955 at 675.692 kb on - strand, within PS417_02955 at 675.877 kb on + strand, within PS417_02955 at 675.878 kb on - strand, within PS417_02955
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 674,441 - PS417_02950 0.18 -1.1 674,441 - PS417_02950 0.18 -2.1 674,460 - PS417_02950 0.19 -2.0 675,161 - PS417_02950 0.89 -2.8 675,185 - -1.4 675,245 - +0.2 675,250 - -0.6 675,250 - -0.7 675,250 - -0.6 675,250 - +1.3 675,250 - -3.7 675,250 - -0.5 675,250 - -0.5 675,277 - +0.8 675,277 - -0.9 675,307 - -0.1 675,491 - -0.3 675,503 + -1.7 675,533 + -0.5 675,534 - -0.3 675,691 + PS417_02955 0.19 -0.8 675,691 + PS417_02955 0.19 -0.6 675,691 + PS417_02955 0.19 -0.3 675,692 - PS417_02955 0.19 +0.5 675,692 - PS417_02955 0.19 -0.3 675,877 + PS417_02955 0.34 +0.9 675,878 - PS417_02955 0.34 -1.3
Or see this region's nucleotide sequence