Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02865 and PS417_02870 are separated by 115 nucleotides PS417_02870 and PS417_02875 are separated by 93 nucleotides PS417_02875 and PS417_02880 are separated by 11 nucleotides
PS417_02865: PS417_02865 - peptidase, at 654,601 to 655,983
_02865
PS417_02870: PS417_02870 - TonB-dependent receptor, at 656,099 to 658,168
_02870
PS417_02875: PS417_02875 - hypothetical protein, at 658,262 to 658,651
_02875
PS417_02880: PS417_02880 - copper chaperone, at 658,663 to 659,145
_02880
Position (kb) 656
657
658
659 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 655.329 kb on - strand, within PS417_02865 at 655.619 kb on + strand, within PS417_02865 at 655.739 kb on + strand at 655.740 kb on - strand, within PS417_02865 at 655.842 kb on - strand, within PS417_02865 at 655.874 kb on + strand at 655.875 kb on - strand at 656.415 kb on + strand, within PS417_02870 at 656.653 kb on - strand, within PS417_02870 at 656.826 kb on + strand, within PS417_02870 at 657.018 kb on + strand, within PS417_02870 at 657.045 kb on + strand, within PS417_02870 at 657.045 kb on + strand, within PS417_02870 at 657.046 kb on - strand, within PS417_02870 at 657.087 kb on + strand, within PS417_02870 at 657.088 kb on - strand, within PS417_02870 at 657.088 kb on - strand, within PS417_02870 at 657.294 kb on + strand, within PS417_02870 at 657.301 kb on - strand, within PS417_02870 at 657.304 kb on - strand, within PS417_02870 at 657.304 kb on - strand, within PS417_02870 at 657.530 kb on - strand, within PS417_02870 at 657.543 kb on + strand, within PS417_02870 at 657.544 kb on - strand, within PS417_02870 at 657.544 kb on - strand, within PS417_02870 at 657.582 kb on + strand, within PS417_02870 at 657.777 kb on + strand, within PS417_02870 at 657.778 kb on - strand, within PS417_02870 at 657.778 kb on - strand, within PS417_02870 at 657.795 kb on + strand, within PS417_02870 at 658.133 kb on - strand at 658.133 kb on - strand at 658.135 kb on - strand at 658.191 kb on + strand at 658.246 kb on + strand at 658.247 kb on - strand at 658.517 kb on - strand, within PS417_02875 at 658.664 kb on + strand at 658.877 kb on - strand, within PS417_02880 at 659.076 kb on - strand, within PS417_02880
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 655,329 - PS417_02865 0.53 -0.8 655,619 + PS417_02865 0.74 +0.3 655,739 + -0.2 655,740 - PS417_02865 0.82 -0.2 655,842 - PS417_02865 0.90 -0.6 655,874 + +1.8 655,875 - -1.6 656,415 + PS417_02870 0.15 -1.4 656,653 - PS417_02870 0.27 -2.6 656,826 + PS417_02870 0.35 -0.8 657,018 + PS417_02870 0.44 +0.2 657,045 + PS417_02870 0.46 -2.9 657,045 + PS417_02870 0.46 -1.6 657,046 - PS417_02870 0.46 +1.0 657,087 + PS417_02870 0.48 -1.2 657,088 - PS417_02870 0.48 -0.5 657,088 - PS417_02870 0.48 +0.4 657,294 + PS417_02870 0.58 -0.3 657,301 - PS417_02870 0.58 -1.4 657,304 - PS417_02870 0.58 -1.7 657,304 - PS417_02870 0.58 -2.1 657,530 - PS417_02870 0.69 -2.0 657,543 + PS417_02870 0.70 -1.4 657,544 - PS417_02870 0.70 -0.9 657,544 - PS417_02870 0.70 -1.7 657,582 + PS417_02870 0.72 -1.6 657,777 + PS417_02870 0.81 -1.0 657,778 - PS417_02870 0.81 +0.2 657,778 - PS417_02870 0.81 -2.9 657,795 + PS417_02870 0.82 -0.6 658,133 - +3.9 658,133 - -2.4 658,135 - -1.4 658,191 + -1.2 658,246 + +1.2 658,247 - +1.6 658,517 - PS417_02875 0.65 -4.0 658,664 + +0.8 658,877 - PS417_02880 0.44 +0.8 659,076 - PS417_02880 0.86 -3.7
Or see this region's nucleotide sequence