Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02825 and PS417_02830 overlap by 1 nucleotides PS417_02830 and PS417_02835 are separated by 166 nucleotides
PS417_02825: PS417_02825 - amino acid ABC transporter permease, at 639,326 to 640,393
_02825
PS417_02830: PS417_02830 - urea ABC transporter permease, at 640,393 to 641,895
_02830
PS417_02835: PS417_02835 - branched-chain amino acid ABC transporter substrate-binding protein, at 642,062 to 643,327
_02835
Position (kb) 640
641
642 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 639.576 kb on + strand, within PS417_02825 at 639.576 kb on + strand, within PS417_02825 at 639.577 kb on - strand, within PS417_02825 at 639.577 kb on - strand, within PS417_02825 at 640.111 kb on - strand, within PS417_02825 at 640.111 kb on - strand, within PS417_02825 at 640.215 kb on + strand, within PS417_02825 at 640.248 kb on + strand, within PS417_02825 at 640.258 kb on + strand, within PS417_02825 at 640.259 kb on - strand, within PS417_02825 at 640.607 kb on + strand, within PS417_02830 at 640.608 kb on - strand, within PS417_02830 at 640.854 kb on - strand, within PS417_02830 at 641.143 kb on - strand, within PS417_02830 at 641.143 kb on - strand, within PS417_02830 at 641.144 kb on + strand, within PS417_02830 at 641.144 kb on + strand, within PS417_02830 at 641.145 kb on - strand, within PS417_02830 at 641.145 kb on - strand, within PS417_02830 at 641.145 kb on - strand, within PS417_02830 at 641.641 kb on + strand, within PS417_02830 at 641.641 kb on + strand, within PS417_02830 at 641.641 kb on + strand, within PS417_02830 at 641.642 kb on - strand, within PS417_02830 at 641.642 kb on - strand, within PS417_02830 at 641.966 kb on - strand at 642.112 kb on - strand at 642.112 kb on - strand at 642.337 kb on + strand, within PS417_02835 at 642.337 kb on + strand, within PS417_02835 at 642.337 kb on + strand, within PS417_02835 at 642.337 kb on + strand, within PS417_02835 at 642.338 kb on - strand, within PS417_02835 at 642.338 kb on - strand, within PS417_02835 at 642.338 kb on - strand, within PS417_02835 at 642.338 kb on - strand, within PS417_02835 at 642.347 kb on + strand, within PS417_02835 at 642.347 kb on + strand, within PS417_02835 at 642.347 kb on + strand, within PS417_02835 at 642.347 kb on + strand, within PS417_02835 at 642.348 kb on - strand, within PS417_02835 at 642.348 kb on - strand, within PS417_02835 at 642.351 kb on + strand, within PS417_02835 at 642.351 kb on + strand, within PS417_02835 at 642.351 kb on + strand, within PS417_02835 at 642.351 kb on + strand, within PS417_02835 at 642.352 kb on - strand, within PS417_02835 at 642.352 kb on - strand, within PS417_02835 at 642.352 kb on - strand, within PS417_02835 at 642.417 kb on + strand, within PS417_02835 at 642.474 kb on + strand, within PS417_02835 at 642.474 kb on + strand, within PS417_02835 at 642.475 kb on - strand, within PS417_02835 at 642.717 kb on + strand, within PS417_02835 at 642.718 kb on - strand, within PS417_02835 at 642.718 kb on - strand, within PS417_02835 at 642.802 kb on - strand, within PS417_02835 at 642.858 kb on + strand, within PS417_02835 at 642.859 kb on - strand, within PS417_02835
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 639,576 + PS417_02825 0.23 -0.6 639,576 + PS417_02825 0.23 -0.5 639,577 - PS417_02825 0.24 -1.1 639,577 - PS417_02825 0.24 -0.1 640,111 - PS417_02825 0.74 -0.1 640,111 - PS417_02825 0.74 +0.3 640,215 + PS417_02825 0.83 +1.8 640,248 + PS417_02825 0.86 +0.5 640,258 + PS417_02825 0.87 -0.2 640,259 - PS417_02825 0.87 +0.3 640,607 + PS417_02830 0.14 +1.8 640,608 - PS417_02830 0.14 +0.3 640,854 - PS417_02830 0.31 +0.0 641,143 - PS417_02830 0.50 -0.5 641,143 - PS417_02830 0.50 -0.0 641,144 + PS417_02830 0.50 +0.3 641,144 + PS417_02830 0.50 +2.8 641,145 - PS417_02830 0.50 +2.1 641,145 - PS417_02830 0.50 +0.4 641,145 - PS417_02830 0.50 +0.1 641,641 + PS417_02830 0.83 +0.6 641,641 + PS417_02830 0.83 +1.0 641,641 + PS417_02830 0.83 +0.5 641,642 - PS417_02830 0.83 +0.2 641,642 - PS417_02830 0.83 +0.6 641,966 - -1.6 642,112 - +0.3 642,112 - -0.7 642,337 + PS417_02835 0.22 -0.6 642,337 + PS417_02835 0.22 -0.9 642,337 + PS417_02835 0.22 -1.7 642,337 + PS417_02835 0.22 +0.4 642,338 - PS417_02835 0.22 -0.0 642,338 - PS417_02835 0.22 +0.8 642,338 - PS417_02835 0.22 +0.5 642,338 - PS417_02835 0.22 +0.0 642,347 + PS417_02835 0.23 +0.4 642,347 + PS417_02835 0.23 +0.4 642,347 + PS417_02835 0.23 +0.3 642,347 + PS417_02835 0.23 +0.5 642,348 - PS417_02835 0.23 -0.9 642,348 - PS417_02835 0.23 +0.9 642,351 + PS417_02835 0.23 -0.6 642,351 + PS417_02835 0.23 -2.6 642,351 + PS417_02835 0.23 -0.3 642,351 + PS417_02835 0.23 -0.4 642,352 - PS417_02835 0.23 -1.1 642,352 - PS417_02835 0.23 +0.2 642,352 - PS417_02835 0.23 +1.9 642,417 + PS417_02835 0.28 -0.7 642,474 + PS417_02835 0.33 +0.8 642,474 + PS417_02835 0.33 +0.4 642,475 - PS417_02835 0.33 +1.1 642,717 + PS417_02835 0.52 -0.4 642,718 - PS417_02835 0.52 -1.3 642,718 - PS417_02835 0.52 -0.1 642,802 - PS417_02835 0.58 +0.9 642,858 + PS417_02835 0.63 +0.7 642,859 - PS417_02835 0.63 -0.8
Or see this region's nucleotide sequence