Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28285 and PS417_28290 are separated by 27 nucleotides PS417_28290 and PS417_28295 are separated by 126 nucleotides PS417_28295 and PS417_28300 overlap by 4 nucleotides
PS417_28285: PS417_28285 - hypothetical protein, at 6,108,189 to 6,109,397
_28285
PS417_28290: PS417_28290 - molecular chaperone DnaK, at 6,109,425 to 6,109,829
_28290
PS417_28295: PS417_28295 - glutamine synthetase, at 6,109,956 to 6,110,324
_28295
PS417_28300: PS417_28300 - N-acetylmuramoyl-L-alanine amidase, at 6,110,321 to 6,111,523
_28300
Position (kb)
6109
6110
6111 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6109.023 kb on - strand, within PS417_28285 at 6109.091 kb on + strand, within PS417_28285 at 6109.327 kb on + strand at 6109.328 kb on - strand at 6109.328 kb on - strand at 6109.328 kb on - strand at 6109.402 kb on + strand at 6109.402 kb on + strand at 6109.403 kb on - strand at 6109.440 kb on - strand at 6109.789 kb on + strand at 6109.790 kb on - strand at 6109.790 kb on - strand at 6109.790 kb on - strand at 6109.885 kb on - strand at 6109.962 kb on + strand at 6109.962 kb on + strand at 6109.962 kb on + strand at 6109.962 kb on + strand at 6109.963 kb on - strand at 6110.085 kb on + strand, within PS417_28295 at 6110.085 kb on + strand, within PS417_28295 at 6110.085 kb on + strand, within PS417_28295 at 6110.115 kb on + strand, within PS417_28295 at 6110.115 kb on + strand, within PS417_28295 at 6110.309 kb on + strand at 6110.309 kb on + strand at 6110.310 kb on - strand at 6110.322 kb on + strand at 6110.361 kb on + strand at 6110.361 kb on + strand at 6110.361 kb on + strand at 6110.361 kb on + strand at 6110.361 kb on + strand at 6110.362 kb on - strand at 6110.362 kb on - strand at 6110.642 kb on - strand, within PS417_28300 at 6110.781 kb on + strand, within PS417_28300 at 6110.781 kb on + strand, within PS417_28300 at 6110.782 kb on - strand, within PS417_28300 at 6110.836 kb on + strand, within PS417_28300 at 6110.837 kb on - strand, within PS417_28300 at 6110.837 kb on - strand, within PS417_28300
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 6,109,023 - PS417_28285 0.69 -0.0 6,109,091 + PS417_28285 0.75 -0.2 6,109,327 + -0.6 6,109,328 - -0.6 6,109,328 - -1.0 6,109,328 - -0.4 6,109,402 + +0.4 6,109,402 + +1.9 6,109,403 - -2.2 6,109,440 - -0.2 6,109,789 + -1.9 6,109,790 - +0.3 6,109,790 - +0.4 6,109,790 - -0.3 6,109,885 - +0.2 6,109,962 + -0.6 6,109,962 + +0.6 6,109,962 + +0.4 6,109,962 + -2.2 6,109,963 - +0.6 6,110,085 + PS417_28295 0.35 -0.5 6,110,085 + PS417_28295 0.35 -2.0 6,110,085 + PS417_28295 0.35 -2.3 6,110,115 + PS417_28295 0.43 -1.5 6,110,115 + PS417_28295 0.43 +0.2 6,110,309 + -0.1 6,110,309 + +0.8 6,110,310 - -2.0 6,110,322 + -0.5 6,110,361 + -0.5 6,110,361 + -0.8 6,110,361 + +1.0 6,110,361 + -0.4 6,110,361 + +0.4 6,110,362 - +0.3 6,110,362 - -2.0 6,110,642 - PS417_28300 0.27 -1.6 6,110,781 + PS417_28300 0.38 -0.4 6,110,781 + PS417_28300 0.38 +0.0 6,110,782 - PS417_28300 0.38 +0.2 6,110,836 + PS417_28300 0.43 -0.3 6,110,837 - PS417_28300 0.43 +0.1 6,110,837 - PS417_28300 0.43 -0.9
Or see this region's nucleotide sequence