Strain Fitness in Pseudomonas simiae WCS417 around PS417_26340

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
5,692,531	-				-0.7
5,692,711	-				-2.0
5,692,770	+				-0.6
5,692,770	+				-1.2
5,692,770	+				-1.0
5,692,770	+				-0.5
5,692,771	-				-3.6
5,692,771	-				-1.7
5,692,787	+				-1.6
5,692,918	-		PS417_26335	0.24	-3.9
5,692,959	+		PS417_26335	0.31	-0.2
5,693,172	+		PS417_26335	0.67	-0.7
5,693,173	-		PS417_26335	0.67	+2.8
5,693,331	+				-2.9
5,693,331	+				-1.7
5,693,331	+				-1.8
5,693,332	-				-1.8
5,693,332	-				-3.8
5,693,365	-				-1.6
5,693,373	+				-0.3
5,693,373	+				+1.1
5,693,373	+				+0.7
5,693,374	-				-1.1
5,693,374	-				-1.0
5,693,374	-				-0.6
5,693,374	-				-1.4
5,693,374	-				-1.6
5,693,374	-				-0.2
5,693,376	-				-0.7
5,693,457	+				+0.7
5,693,504	+				+1.8
5,693,504	+				-1.3
5,693,519	+				-0.9
5,693,662	+		PS417_26340	0.13	-1.8
5,693,663	-		PS417_26340	0.13	-1.5
5,693,784	-		PS417_26340	0.21	-1.6
5,693,820	-		PS417_26340	0.23	-1.2
5,693,820	-		PS417_26340	0.23	-0.3
5,693,885	+		PS417_26340	0.28	-0.6
5,693,885	+		PS417_26340	0.28	+0.2
5,693,936	+		PS417_26340	0.31	+0.2
5,694,315	-		PS417_26340	0.57	-2.9
5,694,495	-		PS417_26340	0.69	-1.8
5,694,508	+		PS417_26340	0.70	-1.4
5,694,509	-		PS417_26340	0.70	-1.0
5,694,669	-		PS417_26340	0.81	-1.3
5,694,788	-		PS417_26340	0.89	-0.2
5,694,947	+				+0.2
5,694,948	-				-0.7
5,694,948	-				+1.0
5,694,948	-				+0.4
5,694,963	+				-1.5
5,694,963	+				+0.4
5,694,963	+				+0.3
5,694,963	+				+1.2
5,694,970	+				-0.1
5,694,971	-				+0.3
5,694,971	-				-0.1
5,694,971	-				+0.4
5,694,972	+				+1.3
5,694,972	+				+1.1
5,694,973	-				-0.2
5,695,034	-				+2.3
5,695,034	-				-1.9
5,695,034	-				-1.6
5,695,034	-				-1.4
5,695,037	+				+0.8
5,695,037	+				+1.3
5,695,037	+				-2.6
5,695,038	-				+1.1
5,695,038	-				+1.0
5,695,038	-				-2.1
5,695,088	-				+2.0
5,695,088	-				+0.6
5,695,129	+				-1.8
5,695,129	+				-3.0
5,695,130	-				-1.1
5,695,130	-				+0.1
5,695,244	+				-2.0
5,695,403	-		PS417_26345	0.17	-1.3
5,695,403	-		PS417_26345	0.17	+2.1
5,695,614	-		PS417_26345	0.30	-2.3
5,695,614	-		PS417_26345	0.30	-1.2
5,695,683	+		PS417_26345	0.34	-0.2
5,695,877	+		PS417_26345	0.45	-1.8