Strain Fitness in Pseudomonas simiae WCS417 around PS417_25825
Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Polymyxin B sulfate 0.003 mg/ml |
---|---|---|---|---|---|
remove | |||||
5,575,002 | + | PS417_25815 | 0.64 | +1.4 | |
5,575,003 | - | PS417_25815 | 0.64 | -1.4 | |
5,575,003 | - | PS417_25815 | 0.64 | +0.7 | |
5,575,006 | + | PS417_25815 | 0.65 | -2.6 | |
5,575,006 | + | PS417_25815 | 0.65 | +0.2 | |
5,575,006 | + | PS417_25815 | 0.65 | +0.9 | |
5,575,006 | + | PS417_25815 | 0.65 | +1.7 | |
5,575,007 | - | PS417_25815 | 0.65 | +0.2 | |
5,575,934 | + | -1.6 | |||
5,575,935 | - | -1.0 | |||
5,575,965 | - | +2.0 | |||
5,575,989 | + | +0.2 | |||
5,576,018 | + | -0.1 | |||
5,576,018 | + | +0.0 | |||
5,576,091 | + | PS417_25825 | 0.27 | -0.6 | |
5,576,193 | + | PS417_25825 | 0.58 | -1.1 | |
5,576,256 | + | PS417_25825 | 0.77 | -2.0 | |
5,576,257 | - | PS417_25825 | 0.78 | -1.2 | |
5,576,257 | - | PS417_25825 | 0.78 | -0.2 | |
5,576,257 | - | PS417_25825 | 0.78 | +0.0 | |
5,576,402 | + | +1.1 | |||
5,576,403 | - | +0.9 | |||
5,576,440 | + | +0.5 | |||
5,576,441 | - | +1.1 | |||
5,576,441 | - | -0.8 | |||
5,576,593 | + | -0.8 | |||
5,576,620 | + | -0.9 | |||
5,576,718 | - | -0.4 | |||
5,576,718 | - | -0.2 | |||
5,576,934 | - | PS417_25830 | 0.17 | -1.1 | |
5,577,012 | - | PS417_25830 | 0.21 | +0.7 |
Or see this region's nucleotide sequence