Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25375 and PS417_25380 are separated by 522 nucleotides PS417_25380 and PS417_25385 are separated by 159 nucleotides PS417_25385 and PS417_25390 are separated by 9 nucleotides
PS417_25375: PS417_25375 - hypothetical protein, at 5,494,419 to 5,496,899
_25375
PS417_25380: PS417_25380 - hypothetical protein, at 5,497,422 to 5,497,613
_25380
PS417_25385: PS417_25385 - single-stranded DNA-binding protein, at 5,497,773 to 5,498,288
_25385
PS417_25390: PS417_25390 - MFS transporter, at 5,498,298 to 5,499,692
_25390
Position (kb) 5497
5498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5496.435 kb on - strand, within PS417_25375 at 5496.435 kb on - strand, within PS417_25375 at 5496.460 kb on - strand, within PS417_25375 at 5496.506 kb on + strand, within PS417_25375 at 5496.507 kb on - strand, within PS417_25375 at 5496.507 kb on - strand, within PS417_25375 at 5496.510 kb on - strand, within PS417_25375 at 5496.730 kb on + strand at 5496.736 kb on + strand at 5496.736 kb on + strand at 5496.737 kb on - strand at 5496.768 kb on + strand at 5496.768 kb on + strand at 5496.769 kb on - strand at 5496.769 kb on - strand at 5496.804 kb on - strand at 5496.882 kb on + strand at 5496.883 kb on - strand at 5496.945 kb on + strand at 5496.951 kb on + strand at 5496.978 kb on - strand at 5497.016 kb on - strand at 5497.028 kb on - strand at 5497.028 kb on - strand at 5497.028 kb on - strand at 5497.148 kb on + strand at 5497.149 kb on - strand at 5497.149 kb on - strand at 5497.151 kb on + strand at 5497.151 kb on + strand at 5497.152 kb on - strand at 5497.167 kb on + strand at 5497.167 kb on + strand at 5497.167 kb on + strand at 5497.242 kb on - strand at 5497.250 kb on + strand at 5497.323 kb on + strand at 5497.323 kb on + strand at 5497.324 kb on - strand at 5497.324 kb on - strand at 5497.338 kb on - strand at 5497.355 kb on + strand at 5497.432 kb on + strand at 5497.432 kb on + strand at 5497.432 kb on + strand at 5497.432 kb on + strand at 5497.433 kb on - strand at 5497.433 kb on - strand at 5497.433 kb on - strand at 5497.442 kb on + strand, within PS417_25380 at 5497.508 kb on + strand, within PS417_25380 at 5497.523 kb on - strand at 5497.525 kb on + strand, within PS417_25380 at 5497.525 kb on + strand, within PS417_25380 at 5497.525 kb on + strand, within PS417_25380 at 5497.562 kb on + strand, within PS417_25380 at 5497.606 kb on - strand at 5497.620 kb on + strand at 5497.652 kb on + strand at 5497.652 kb on + strand at 5497.653 kb on - strand at 5497.655 kb on + strand at 5497.655 kb on + strand at 5497.655 kb on + strand at 5497.656 kb on - strand at 5497.695 kb on + strand at 5497.723 kb on + strand at 5497.724 kb on - strand at 5497.724 kb on - strand at 5497.727 kb on + strand at 5497.755 kb on + strand at 5497.756 kb on - strand at 5497.767 kb on + strand at 5497.768 kb on - strand at 5497.768 kb on - strand at 5498.381 kb on - strand at 5498.504 kb on - strand, within PS417_25390 at 5498.523 kb on - strand, within PS417_25390
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,496,435 - PS417_25375 0.81 +2.1 5,496,435 - PS417_25375 0.81 -1.2 5,496,460 - PS417_25375 0.82 -1.1 5,496,506 + PS417_25375 0.84 +3.7 5,496,507 - PS417_25375 0.84 -0.3 5,496,507 - PS417_25375 0.84 -0.2 5,496,510 - PS417_25375 0.84 -1.7 5,496,730 + +0.3 5,496,736 + +0.4 5,496,736 + -0.5 5,496,737 - +0.0 5,496,768 + -1.0 5,496,768 + +0.2 5,496,769 - -1.3 5,496,769 - -0.0 5,496,804 - -1.6 5,496,882 + -0.0 5,496,883 - +1.1 5,496,945 + -0.4 5,496,951 + -1.7 5,496,978 - +1.3 5,497,016 - +0.4 5,497,028 - -1.6 5,497,028 - -0.6 5,497,028 - -0.1 5,497,148 + +3.5 5,497,149 - -0.4 5,497,149 - +0.6 5,497,151 + +0.5 5,497,151 + -0.4 5,497,152 - +0.5 5,497,167 + -1.3 5,497,167 + -1.7 5,497,167 + -0.5 5,497,242 - +1.4 5,497,250 + +0.3 5,497,323 + +1.4 5,497,323 + -0.7 5,497,324 - +1.3 5,497,324 - +1.2 5,497,338 - -0.4 5,497,355 + +0.5 5,497,432 + -0.8 5,497,432 + -0.8 5,497,432 + -1.3 5,497,432 + +1.9 5,497,433 - +0.9 5,497,433 - +1.1 5,497,433 - +4.1 5,497,442 + PS417_25380 0.10 -0.8 5,497,508 + PS417_25380 0.45 -1.8 5,497,523 - -0.8 5,497,525 + PS417_25380 0.54 -1.0 5,497,525 + PS417_25380 0.54 +0.0 5,497,525 + PS417_25380 0.54 -3.0 5,497,562 + PS417_25380 0.73 -0.3 5,497,606 - +2.4 5,497,620 + +0.5 5,497,652 + -0.8 5,497,652 + -0.8 5,497,653 - +2.4 5,497,655 + +0.6 5,497,655 + -0.4 5,497,655 + -2.1 5,497,656 - +0.8 5,497,695 + +0.3 5,497,723 + +0.6 5,497,724 - +0.2 5,497,724 - -0.6 5,497,727 + -0.0 5,497,755 + +0.2 5,497,756 - +0.3 5,497,767 + +0.4 5,497,768 - -0.3 5,497,768 - -2.9 5,498,381 - -1.5 5,498,504 - PS417_25390 0.15 -1.3 5,498,523 - PS417_25390 0.16 -0.2
Or see this region's nucleotide sequence