Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24110 and PS417_24115 are separated by 151 nucleotides PS417_24115 and PS417_24120 are separated by 688 nucleotides
PS417_24110: PS417_24110 - 4Fe-4S ferredoxin, at 5,219,817 to 5,222,627
_24110
PS417_24115: PS417_24115 - hypothetical protein, at 5,222,779 to 5,223,057
_24115
PS417_24120: PS417_24120 - integrase, at 5,223,746 to 5,225,002
_24120
Position (kb)
5222
5223
5224 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5221.929 kb on + strand, within PS417_24110 at 5221.929 kb on + strand, within PS417_24110 at 5221.929 kb on + strand, within PS417_24110 at 5222.098 kb on - strand, within PS417_24110 at 5222.118 kb on - strand, within PS417_24110 at 5222.236 kb on + strand, within PS417_24110 at 5222.236 kb on + strand, within PS417_24110 at 5222.236 kb on + strand, within PS417_24110 at 5222.245 kb on - strand, within PS417_24110 at 5222.519 kb on + strand at 5222.519 kb on + strand at 5222.590 kb on - strand at 5222.590 kb on - strand at 5222.689 kb on + strand at 5222.689 kb on + strand at 5222.690 kb on - strand at 5222.774 kb on - strand at 5222.774 kb on - strand at 5222.778 kb on + strand at 5222.779 kb on - strand at 5222.779 kb on - strand at 5222.779 kb on - strand at 5222.896 kb on - strand, within PS417_24115 at 5222.939 kb on + strand, within PS417_24115 at 5223.570 kb on - strand at 5223.570 kb on - strand at 5223.570 kb on - strand at 5223.602 kb on + strand at 5223.762 kb on + strand at 5223.763 kb on - strand at 5223.785 kb on - strand at 5223.812 kb on + strand at 5223.812 kb on + strand at 5223.812 kb on + strand at 5223.812 kb on + strand at 5223.813 kb on - strand at 5223.813 kb on - strand at 5223.901 kb on + strand at 5223.913 kb on + strand, within PS417_24120 at 5223.914 kb on - strand, within PS417_24120 at 5223.914 kb on - strand, within PS417_24120 at 5224.024 kb on + strand, within PS417_24120 at 5224.030 kb on - strand, within PS417_24120
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,221,929 + PS417_24110 0.75 +1.9 5,221,929 + PS417_24110 0.75 +0.4 5,221,929 + PS417_24110 0.75 +0.1 5,222,098 - PS417_24110 0.81 +0.5 5,222,118 - PS417_24110 0.82 -0.1 5,222,236 + PS417_24110 0.86 -0.6 5,222,236 + PS417_24110 0.86 -1.3 5,222,236 + PS417_24110 0.86 -0.3 5,222,245 - PS417_24110 0.86 -1.3 5,222,519 + -1.1 5,222,519 + +0.7 5,222,590 - -1.3 5,222,590 - -1.1 5,222,689 + -1.8 5,222,689 + -0.9 5,222,690 - +1.6 5,222,774 - -1.4 5,222,774 - -0.4 5,222,778 + -0.6 5,222,779 - -0.4 5,222,779 - +1.6 5,222,779 - -1.4 5,222,896 - PS417_24115 0.42 -1.2 5,222,939 + PS417_24115 0.57 -1.9 5,223,570 - +1.2 5,223,570 - +0.7 5,223,570 - -0.7 5,223,602 + +0.3 5,223,762 + -0.4 5,223,763 - -2.6 5,223,785 - +1.1 5,223,812 + +0.2 5,223,812 + -0.2 5,223,812 + +0.8 5,223,812 + +0.1 5,223,813 - -0.7 5,223,813 - +2.7 5,223,901 + +3.6 5,223,913 + PS417_24120 0.13 +0.1 5,223,914 - PS417_24120 0.13 +0.7 5,223,914 - PS417_24120 0.13 +1.1 5,224,024 + PS417_24120 0.22 +0.3 5,224,030 - PS417_24120 0.23 -0.6
Or see this region's nucleotide sequence