Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00230 and PS417_00235 are separated by 86 nucleotides PS417_00235 and PS417_00240 overlap by 4 nucleotides PS417_00240 and PS417_00245 are separated by 102 nucleotides
PS417_00230: PS417_00230 - aminopeptidase, at 44,748 to 45,791
_00230
PS417_00235: PS417_00235 - HAD family hydrolase, at 45,878 to 46,537
_00235
PS417_00240: PS417_00240 - anhydrase, at 46,534 to 47,076
_00240
PS417_00245: PS417_00245 - oligopeptidase A, at 47,179 to 49,230
_00245
Position (kb) 46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 45.586 kb on - strand, within PS417_00230 at 45.642 kb on + strand, within PS417_00230 at 45.642 kb on + strand, within PS417_00230 at 45.643 kb on - strand, within PS417_00230 at 45.643 kb on - strand, within PS417_00230 at 45.875 kb on - strand at 45.892 kb on + strand at 46.137 kb on + strand, within PS417_00235 at 46.137 kb on + strand, within PS417_00235 at 46.218 kb on + strand, within PS417_00235 at 46.218 kb on + strand, within PS417_00235 at 46.218 kb on + strand, within PS417_00235 at 46.219 kb on - strand, within PS417_00235 at 46.288 kb on - strand, within PS417_00235 at 46.360 kb on - strand, within PS417_00235 at 46.468 kb on + strand, within PS417_00235 at 46.580 kb on + strand at 46.595 kb on + strand, within PS417_00240 at 46.654 kb on + strand, within PS417_00240 at 46.654 kb on + strand, within PS417_00240 at 46.654 kb on + strand, within PS417_00240 at 46.654 kb on + strand, within PS417_00240 at 46.654 kb on + strand, within PS417_00240 at 46.655 kb on - strand, within PS417_00240 at 46.655 kb on - strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.658 kb on + strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 46.659 kb on - strand, within PS417_00240 at 47.079 kb on + strand at 47.102 kb on - strand at 47.102 kb on - strand at 47.123 kb on + strand at 47.124 kb on - strand at 47.128 kb on - strand at 47.128 kb on - strand at 47.150 kb on + strand at 47.154 kb on + strand at 47.154 kb on + strand at 47.155 kb on - strand at 47.155 kb on - strand at 47.210 kb on - strand at 47.210 kb on - strand at 47.444 kb on - strand, within PS417_00245 at 47.473 kb on + strand, within PS417_00245 at 47.474 kb on - strand, within PS417_00245 at 47.843 kb on - strand, within PS417_00245 at 47.843 kb on - strand, within PS417_00245 at 47.843 kb on - strand, within PS417_00245 at 47.843 kb on - strand, within PS417_00245 at 47.843 kb on - strand, within PS417_00245 at 47.846 kb on - strand, within PS417_00245 at 47.860 kb on + strand, within PS417_00245 at 47.861 kb on - strand, within PS417_00245 at 47.902 kb on + strand, within PS417_00245 at 47.902 kb on + strand, within PS417_00245 at 47.908 kb on - strand, within PS417_00245 at 48.011 kb on - strand, within PS417_00245 at 48.011 kb on - strand, within PS417_00245
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 45,586 - PS417_00230 0.80 +0.0 45,642 + PS417_00230 0.86 -0.1 45,642 + PS417_00230 0.86 -0.6 45,643 - PS417_00230 0.86 +0.2 45,643 - PS417_00230 0.86 +0.7 45,875 - -2.1 45,892 + +0.7 46,137 + PS417_00235 0.39 -2.6 46,137 + PS417_00235 0.39 +0.2 46,218 + PS417_00235 0.52 +0.1 46,218 + PS417_00235 0.52 -1.4 46,218 + PS417_00235 0.52 +0.1 46,219 - PS417_00235 0.52 +0.4 46,288 - PS417_00235 0.62 +0.6 46,360 - PS417_00235 0.73 +0.1 46,468 + PS417_00235 0.89 +0.8 46,580 + +0.2 46,595 + PS417_00240 0.11 -1.9 46,654 + PS417_00240 0.22 -1.9 46,654 + PS417_00240 0.22 -0.3 46,654 + PS417_00240 0.22 +1.2 46,654 + PS417_00240 0.22 +0.8 46,654 + PS417_00240 0.22 +0.9 46,655 - PS417_00240 0.22 -0.2 46,655 - PS417_00240 0.22 +0.2 46,658 + PS417_00240 0.23 -0.2 46,658 + PS417_00240 0.23 -0.2 46,658 + PS417_00240 0.23 +1.0 46,658 + PS417_00240 0.23 +0.7 46,658 + PS417_00240 0.23 -1.7 46,658 + PS417_00240 0.23 +1.2 46,659 - PS417_00240 0.23 -1.0 46,659 - PS417_00240 0.23 +0.7 46,659 - PS417_00240 0.23 +1.8 46,659 - PS417_00240 0.23 -0.3 46,659 - PS417_00240 0.23 -1.5 46,659 - PS417_00240 0.23 +0.5 46,659 - PS417_00240 0.23 +0.3 46,659 - PS417_00240 0.23 +0.4 46,659 - PS417_00240 0.23 +0.2 46,659 - PS417_00240 0.23 -0.2 46,659 - PS417_00240 0.23 -0.3 47,079 + -0.2 47,102 - +1.9 47,102 - +0.1 47,123 + -1.9 47,124 - +0.4 47,128 - -2.3 47,128 - -0.5 47,150 + +0.6 47,154 + +0.0 47,154 + +1.4 47,155 - -2.7 47,155 - +0.5 47,210 - +0.4 47,210 - +0.7 47,444 - PS417_00245 0.13 +0.1 47,473 + PS417_00245 0.14 +0.6 47,474 - PS417_00245 0.14 -2.6 47,843 - PS417_00245 0.32 -0.1 47,843 - PS417_00245 0.32 -0.6 47,843 - PS417_00245 0.32 +1.2 47,843 - PS417_00245 0.32 -0.3 47,843 - PS417_00245 0.32 -0.1 47,846 - PS417_00245 0.33 +1.3 47,860 + PS417_00245 0.33 +0.9 47,861 - PS417_00245 0.33 +1.2 47,902 + PS417_00245 0.35 +0.5 47,902 + PS417_00245 0.35 +0.9 47,908 - PS417_00245 0.36 +2.8 48,011 - PS417_00245 0.41 -0.4 48,011 - PS417_00245 0.41 -0.8
Or see this region's nucleotide sequence