Strain Fitness in Pseudomonas simiae WCS417 around PS417_22250
Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Polymyxin B sulfate 0.003 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,821,441 | + | PS417_22245 | 0.26 | +0.2 | |
4,821,442 | - | PS417_22245 | 0.26 | -1.4 | |
4,821,539 | - | PS417_22245 | 0.36 | +1.0 | |
4,821,547 | + | PS417_22245 | 0.37 | +0.6 | |
4,821,553 | + | PS417_22245 | 0.38 | +0.0 | |
4,821,553 | + | PS417_22245 | 0.38 | +0.8 | |
4,821,554 | - | PS417_22245 | 0.38 | +0.2 | |
4,821,554 | - | PS417_22245 | 0.38 | +0.4 | |
4,821,823 | + | PS417_22245 | 0.66 | -0.7 | |
4,821,824 | - | PS417_22245 | 0.66 | +1.7 | |
4,821,922 | + | PS417_22245 | 0.76 | -1.3 | |
4,821,923 | - | PS417_22245 | 0.76 | -1.3 | |
4,821,997 | + | PS417_22245 | 0.84 | +0.4 | |
4,821,998 | - | PS417_22245 | 0.84 | -0.2 | |
4,821,998 | - | PS417_22245 | 0.84 | -0.0 | |
4,822,151 | - | +0.3 | |||
4,822,151 | - | +0.4 | |||
4,822,181 | - | -1.1 | |||
4,822,223 | + | -1.0 | |||
4,822,528 | + | PS417_22250 | 0.15 | -1.4 | |
4,822,636 | + | PS417_22250 | 0.24 | +0.7 | |
4,822,637 | - | PS417_22250 | 0.24 | -1.0 | |
4,823,631 | - | +0.9 | |||
4,823,656 | - | +0.7 | |||
4,823,897 | - | +1.1 | |||
4,823,919 | - | +0.9 | |||
4,823,919 | - | +0.1 | |||
4,824,139 | + | PS417_22260 | 0.20 | -1.8 | |
4,824,140 | - | PS417_22260 | 0.20 | +0.5 |
Or see this region's nucleotide sequence