Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01665 and PS417_01670 are separated by 206 nucleotides PS417_01670 and PS417_01675 are separated by 238 nucleotides
PS417_01665: PS417_01665 - GTP-binding protein TypA, at 365,500 to 367,320
_01665
PS417_01670: PS417_01670 - Fe-S-oxidoreductase, at 367,527 to 367,961
_01670
PS417_01675: PS417_01675 - maltodextrin phosphorylase, at 368,200 to 370,650
_01675
Position (kb) 367
368 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 367.323 kb on + strand at 367.536 kb on - strand at 367.582 kb on + strand, within PS417_01670 at 367.652 kb on + strand, within PS417_01670 at 367.652 kb on + strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.671 kb on - strand, within PS417_01670 at 367.817 kb on + strand, within PS417_01670 at 367.818 kb on - strand, within PS417_01670 at 367.818 kb on - strand, within PS417_01670 at 367.892 kb on + strand, within PS417_01670 at 367.892 kb on + strand, within PS417_01670 at 367.893 kb on - strand, within PS417_01670 at 367.904 kb on - strand, within PS417_01670 at 368.062 kb on - strand at 368.104 kb on + strand at 368.105 kb on - strand at 368.138 kb on + strand at 368.158 kb on - strand at 368.164 kb on + strand at 368.165 kb on - strand at 368.177 kb on + strand at 368.178 kb on - strand at 368.178 kb on - strand at 368.178 kb on - strand at 368.268 kb on + strand at 368.268 kb on + strand at 368.386 kb on + strand at 368.410 kb on + strand at 368.411 kb on - strand at 368.450 kb on - strand, within PS417_01675 at 368.854 kb on + strand, within PS417_01675
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 367,323 + -0.2 367,536 - +0.3 367,582 + PS417_01670 0.13 -1.0 367,652 + PS417_01670 0.29 -1.0 367,652 + PS417_01670 0.29 -0.5 367,653 - PS417_01670 0.29 +0.2 367,653 - PS417_01670 0.29 -0.5 367,653 - PS417_01670 0.29 +0.0 367,671 - PS417_01670 0.33 -2.7 367,817 + PS417_01670 0.67 -0.1 367,818 - PS417_01670 0.67 +0.1 367,818 - PS417_01670 0.67 -3.8 367,892 + PS417_01670 0.84 +4.2 367,892 + PS417_01670 0.84 -0.9 367,893 - PS417_01670 0.84 -1.9 367,904 - PS417_01670 0.87 +1.0 368,062 - +2.0 368,104 + -0.6 368,105 - -1.1 368,138 + -0.8 368,158 - +0.6 368,164 + -0.5 368,165 - -1.4 368,177 + +1.0 368,178 - -2.1 368,178 - +0.0 368,178 - +0.8 368,268 + +0.5 368,268 + +1.8 368,386 + -0.9 368,410 + -0.8 368,411 - -0.8 368,450 - PS417_01675 0.10 -0.5 368,854 + PS417_01675 0.27 +1.8
Or see this region's nucleotide sequence