Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14075 and PS417_14080 are separated by 9 nucleotides PS417_14080 and PS417_14085 are separated by 173 nucleotides PS417_14085 and PS417_14090 are separated by 214 nucleotides
PS417_14075: PS417_14075 - hypothetical protein, at 3,091,807 to 3,092,037
_14075
PS417_14080: PS417_14080 - hypothetical protein, at 3,092,047 to 3,092,328
_14080
PS417_14085: PS417_14085 - hypothetical protein, at 3,092,502 to 3,092,855
_14085
PS417_14090: PS417_14090 - hypothetical protein, at 3,093,070 to 3,093,372
_14090
Position (kb)
3092
3093 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3091.077 kb on - strand at 3091.134 kb on + strand at 3091.134 kb on + strand at 3091.138 kb on + strand at 3091.138 kb on + strand at 3091.138 kb on + strand at 3091.138 kb on + strand at 3091.138 kb on + strand at 3091.139 kb on - strand at 3091.139 kb on - strand at 3091.139 kb on - strand at 3091.139 kb on - strand at 3091.144 kb on + strand at 3091.145 kb on - strand at 3091.228 kb on - strand at 3091.228 kb on - strand at 3091.245 kb on - strand at 3091.247 kb on + strand at 3091.247 kb on + strand at 3091.281 kb on + strand at 3091.282 kb on - strand at 3091.282 kb on - strand at 3091.282 kb on - strand at 3091.307 kb on - strand at 3091.338 kb on + strand at 3091.339 kb on - strand at 3091.348 kb on + strand at 3091.434 kb on + strand at 3091.435 kb on - strand at 3091.443 kb on + strand at 3091.443 kb on + strand at 3091.443 kb on + strand at 3091.498 kb on + strand at 3091.500 kb on - strand at 3091.540 kb on + strand at 3091.540 kb on + strand at 3091.553 kb on + strand at 3091.605 kb on - strand at 3091.605 kb on - strand at 3091.619 kb on + strand at 3091.620 kb on - strand at 3091.672 kb on - strand at 3091.851 kb on - strand, within PS417_14075 at 3091.901 kb on + strand, within PS417_14075 at 3092.035 kb on + strand at 3092.041 kb on + strand at 3092.048 kb on + strand at 3092.066 kb on - strand at 3092.089 kb on + strand, within PS417_14080 at 3092.089 kb on + strand, within PS417_14080 at 3092.262 kb on - strand, within PS417_14080 at 3092.328 kb on + strand at 3092.329 kb on - strand at 3092.330 kb on + strand at 3092.330 kb on + strand at 3092.330 kb on + strand at 3092.330 kb on + strand at 3092.331 kb on - strand at 3092.331 kb on - strand at 3092.331 kb on - strand at 3092.410 kb on + strand at 3092.410 kb on + strand at 3092.410 kb on + strand at 3092.411 kb on - strand at 3092.411 kb on - strand at 3092.414 kb on + strand at 3092.414 kb on + strand at 3092.585 kb on + strand, within PS417_14085 at 3092.591 kb on + strand, within PS417_14085 at 3092.678 kb on + strand at 3092.740 kb on + strand, within PS417_14085 at 3092.740 kb on + strand, within PS417_14085 at 3092.740 kb on + strand, within PS417_14085 at 3092.856 kb on - strand at 3092.859 kb on - strand at 3092.879 kb on + strand at 3092.880 kb on - strand at 3092.880 kb on - strand at 3092.880 kb on - strand at 3092.916 kb on - strand at 3092.932 kb on - strand at 3092.944 kb on - strand at 3092.944 kb on - strand at 3092.944 kb on - strand at 3092.987 kb on - strand at 3093.142 kb on - strand, within PS417_14090
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 3,091,077 - -0.3 3,091,134 + +2.4 3,091,134 + -2.4 3,091,138 + -1.1 3,091,138 + -2.1 3,091,138 + -2.2 3,091,138 + -0.7 3,091,138 + -1.1 3,091,139 - -1.4 3,091,139 - -0.1 3,091,139 - +0.3 3,091,139 - -0.2 3,091,144 + +0.3 3,091,145 - -1.2 3,091,228 - -0.0 3,091,228 - -0.7 3,091,245 - -1.8 3,091,247 + +2.7 3,091,247 + -0.9 3,091,281 + -1.5 3,091,282 - -0.2 3,091,282 - +0.9 3,091,282 - +1.2 3,091,307 - -1.1 3,091,338 + -0.0 3,091,339 - -0.3 3,091,348 + +3.0 3,091,434 + +0.7 3,091,435 - -0.1 3,091,443 + -1.6 3,091,443 + -0.3 3,091,443 + -0.3 3,091,498 + +0.7 3,091,500 - -0.8 3,091,540 + -2.2 3,091,540 + +0.9 3,091,553 + -0.8 3,091,605 - -1.3 3,091,605 - -0.1 3,091,619 + +1.3 3,091,620 - +0.7 3,091,672 - +1.4 3,091,851 - PS417_14075 0.19 -0.6 3,091,901 + PS417_14075 0.41 +0.9 3,092,035 + +0.4 3,092,041 + +0.1 3,092,048 + -1.2 3,092,066 - -0.3 3,092,089 + PS417_14080 0.15 +0.7 3,092,089 + PS417_14080 0.15 -0.2 3,092,262 - PS417_14080 0.76 +0.6 3,092,328 + +0.1 3,092,329 - -1.0 3,092,330 + -0.0 3,092,330 + -0.8 3,092,330 + -0.5 3,092,330 + -0.5 3,092,331 - +0.5 3,092,331 - +1.3 3,092,331 - +0.3 3,092,410 + -0.5 3,092,410 + -1.0 3,092,410 + +0.0 3,092,411 - +1.4 3,092,411 - -0.5 3,092,414 + -0.1 3,092,414 + +0.2 3,092,585 + PS417_14085 0.23 +0.5 3,092,591 + PS417_14085 0.25 +0.7 3,092,678 + +0.2 3,092,740 + PS417_14085 0.67 -0.2 3,092,740 + PS417_14085 0.67 +0.5 3,092,740 + PS417_14085 0.67 -0.4 3,092,856 - +0.8 3,092,859 - -0.4 3,092,879 + -1.8 3,092,880 - -0.1 3,092,880 - -0.3 3,092,880 - -1.5 3,092,916 - -0.4 3,092,932 - -0.3 3,092,944 - -0.6 3,092,944 - -0.2 3,092,944 - -0.6 3,092,987 - -0.1 3,093,142 - PS417_14090 0.24 +0.7
Or see this region's nucleotide sequence