Strain Fitness in Pseudomonas simiae WCS417 around PS417_12890

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12885 and PS417_12890 are separated by 149 nucleotidesPS417_12890 and PS417_12895 are separated by 191 nucleotides PS417_12885: PS417_12885 - phosphatidylcholine synthase, at 2,817,761 to 2,818,480 _12885 PS417_12890: PS417_12890 - methyltransferase, at 2,818,630 to 2,819,544 _12890 PS417_12895: PS417_12895 - pyruvate dehydrogenase, at 2,819,736 to 2,822,402 _12895 Position (kb) 2818 2819 2820Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2817.690 kb on + strandat 2817.691 kb on - strandat 2817.806 kb on - strandat 2817.822 kb on + strandat 2817.823 kb on - strandat 2817.925 kb on + strand, within PS417_12885at 2818.042 kb on + strand, within PS417_12885at 2818.042 kb on + strand, within PS417_12885at 2818.044 kb on + strandat 2818.044 kb on + strand, within PS417_12885at 2818.045 kb on - strand, within PS417_12885at 2818.045 kb on - strand, within PS417_12885at 2818.194 kb on + strand, within PS417_12885at 2818.223 kb on + strand, within PS417_12885at 2818.223 kb on + strand, within PS417_12885at 2818.223 kb on + strand, within PS417_12885at 2818.224 kb on - strand, within PS417_12885at 2818.224 kb on - strand, within PS417_12885at 2818.224 kb on - strand, within PS417_12885at 2818.227 kb on + strand, within PS417_12885at 2818.227 kb on + strand, within PS417_12885at 2818.228 kb on - strand, within PS417_12885at 2818.228 kb on - strand, within PS417_12885at 2818.237 kb on - strandat 2818.410 kb on - strandat 2818.427 kb on - strandat 2818.460 kb on + strandat 2818.461 kb on - strandat 2818.475 kb on + strandat 2818.606 kb on + strandat 2818.795 kb on + strand, within PS417_12890at 2818.795 kb on + strand, within PS417_12890at 2818.796 kb on - strand, within PS417_12890at 2818.812 kb on + strand, within PS417_12890at 2819.050 kb on + strand, within PS417_12890at 2819.050 kb on + strandat 2819.051 kb on - strand, within PS417_12890at 2819.051 kb on - strand, within PS417_12890at 2819.097 kb on + strand, within PS417_12890at 2819.315 kb on + strand, within PS417_12890at 2819.316 kb on - strand, within PS417_12890at 2819.531 kb on - strandat 2819.677 kb on + strandat 2819.910 kb on + strandat 2819.910 kb on + strandat 2819.913 kb on - strandat 2819.918 kb on + strandat 2820.063 kb on + strand, within PS417_12895at 2820.150 kb on + strand, within PS417_12895at 2820.151 kb on - strand, within PS417_12895at 2820.151 kb on - strand, within PS417_12895

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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2,817,690 + -0.7
2,817,691 - -0.3
2,817,806 - -0.1
2,817,822 + +0.7
2,817,823 - +1.1
2,817,925 + PS417_12885 0.23 -3.1
2,818,042 + PS417_12885 0.39 +1.4
2,818,042 + PS417_12885 0.39 +0.0
2,818,044 + -0.8
2,818,044 + PS417_12885 0.39 -2.6
2,818,045 - PS417_12885 0.39 -1.1
2,818,045 - PS417_12885 0.39 +0.9
2,818,194 + PS417_12885 0.60 +0.8
2,818,223 + PS417_12885 0.64 +0.7
2,818,223 + PS417_12885 0.64 +0.8
2,818,223 + PS417_12885 0.64 -0.9
2,818,224 - PS417_12885 0.64 -0.4
2,818,224 - PS417_12885 0.64 +0.4
2,818,224 - PS417_12885 0.64 -1.1
2,818,227 + PS417_12885 0.65 +1.0
2,818,227 + PS417_12885 0.65 +0.0
2,818,228 - PS417_12885 0.65 -0.7
2,818,228 - PS417_12885 0.65 +0.6
2,818,237 - -0.8
2,818,410 - -0.4
2,818,427 - +0.2
2,818,460 + +0.3
2,818,461 - +0.6
2,818,475 + +1.2
2,818,606 + -0.9
2,818,795 + PS417_12890 0.18 -0.1
2,818,795 + PS417_12890 0.18 -1.2
2,818,796 - PS417_12890 0.18 -2.1
2,818,812 + PS417_12890 0.20 -1.2
2,819,050 + PS417_12890 0.46 -1.8
2,819,050 + -0.1
2,819,051 - PS417_12890 0.46 -4.0
2,819,051 - PS417_12890 0.46 +1.8
2,819,097 + PS417_12890 0.51 -2.1
2,819,315 + PS417_12890 0.75 -0.9
2,819,316 - PS417_12890 0.75 -0.9
2,819,531 - +0.9
2,819,677 + -0.1
2,819,910 + +2.1
2,819,910 + -0.3
2,819,913 - +0.8
2,819,918 + -0.1
2,820,063 + PS417_12895 0.12 +1.6
2,820,150 + PS417_12895 0.16 -0.5
2,820,151 - PS417_12895 0.16 -0.6
2,820,151 - PS417_12895 0.16 -0.4

Or see this region's nucleotide sequence