Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00970 and PS417_00975 are separated by 15 nucleotides PS417_00975 and PS417_00985 are separated by 136 nucleotides PS417_00985 and PS417_00990 are separated by 176 nucleotides
PS417_00970: PS417_00970 - hypothetical protein, at 215,244 to 216,023
_00970
PS417_00975: PS417_00975 - hypothetical protein, at 216,039 to 216,356
_00975
PS417_00985: PS417_00985 - MFS transporter, at 216,493 to 217,662
_00985
PS417_00990: PS417_00990 - LysR family transcriptional regulator, at 217,839 to 218,690
_00990
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 215.547 kb on + strand, within PS417_00970 at 215.548 kb on - strand, within PS417_00970 at 215.574 kb on - strand, within PS417_00970 at 215.832 kb on + strand, within PS417_00970 at 215.832 kb on + strand, within PS417_00970 at 215.833 kb on - strand, within PS417_00970 at 215.833 kb on - strand, within PS417_00970 at 215.868 kb on + strand, within PS417_00970 at 215.869 kb on - strand, within PS417_00970 at 215.869 kb on - strand, within PS417_00970 at 216.045 kb on + strand at 216.046 kb on - strand at 216.186 kb on + strand, within PS417_00975 at 216.186 kb on + strand, within PS417_00975 at 216.491 kb on - strand at 216.494 kb on + strand at 216.494 kb on + strand at 216.495 kb on - strand at 216.495 kb on - strand at 216.496 kb on + strand at 216.980 kb on + strand, within PS417_00985 at 217.010 kb on + strand, within PS417_00985 at 217.034 kb on + strand, within PS417_00985 at 217.257 kb on - strand, within PS417_00985 at 217.478 kb on - strand, within PS417_00985 at 217.650 kb on + strand at 217.683 kb on + strand at 217.684 kb on - strand at 217.765 kb on + strand at 217.766 kb on - strand at 217.981 kb on + strand, within PS417_00990 at 217.982 kb on - strand, within PS417_00990 at 218.040 kb on + strand, within PS417_00990 at 218.040 kb on + strand, within PS417_00990 at 218.516 kb on + strand, within PS417_00990 at 218.516 kb on + strand, within PS417_00990 at 218.517 kb on - strand, within PS417_00990 at 218.517 kb on - strand, within PS417_00990 at 218.540 kb on - strand, within PS417_00990 at 218.610 kb on + strand at 218.610 kb on + strand at 218.610 kb on + strand at 218.627 kb on - strand at 218.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 215,547 + PS417_00970 0.39 -0.1 215,548 - PS417_00970 0.39 -0.3 215,574 - PS417_00970 0.42 +0.2 215,832 + PS417_00970 0.75 +2.1 215,832 + PS417_00970 0.75 -1.9 215,833 - PS417_00970 0.76 -2.8 215,833 - PS417_00970 0.76 -0.3 215,868 + PS417_00970 0.80 +0.2 215,869 - PS417_00970 0.80 -0.9 215,869 - PS417_00970 0.80 -0.6 216,045 + +1.2 216,046 - +1.9 216,186 + PS417_00975 0.46 +0.2 216,186 + PS417_00975 0.46 -1.5 216,491 - -0.0 216,494 + +0.2 216,494 + +0.2 216,495 - +0.2 216,495 - -1.6 216,496 + +1.6 216,980 + PS417_00985 0.42 -0.6 217,010 + PS417_00985 0.44 +0.9 217,034 + PS417_00985 0.46 -1.6 217,257 - PS417_00985 0.65 -0.9 217,478 - PS417_00985 0.84 -2.7 217,650 + -0.2 217,683 + -0.2 217,684 - +1.6 217,765 + -0.2 217,766 - -0.3 217,981 + PS417_00990 0.17 -0.2 217,982 - PS417_00990 0.17 -0.4 218,040 + PS417_00990 0.24 -0.2 218,040 + PS417_00990 0.24 +0.2 218,516 + PS417_00990 0.79 +0.2 218,516 + PS417_00990 0.79 -0.8 218,517 - PS417_00990 0.80 +1.1 218,517 - PS417_00990 0.80 -0.6 218,540 - PS417_00990 0.82 +0.5 218,610 + -0.9 218,610 + +2.8 218,610 + -2.5 218,627 - -2.2 218,627 - -0.4
Or see this region's nucleotide sequence