Strain Fitness in Pseudomonas simiae WCS417 around PS417_00975

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00965 and PS417_00970 are separated by 82 nucleotidesPS417_00970 and PS417_00975 are separated by 15 nucleotidesPS417_00975 and PS417_00985 are separated by 136 nucleotides PS417_00965: PS417_00965 - AraC family transcriptional regulator, at 214,157 to 215,161 _00965 PS417_00970: PS417_00970 - hypothetical protein, at 215,244 to 216,023 _00970 PS417_00975: PS417_00975 - hypothetical protein, at 216,039 to 216,356 _00975 PS417_00985: PS417_00985 - MFS transporter, at 216,493 to 217,662 _00985 Position (kb) 216 217Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 215.239 kb on - strandat 215.448 kb on + strand, within PS417_00970at 215.449 kb on - strand, within PS417_00970at 215.547 kb on + strand, within PS417_00970at 215.548 kb on - strand, within PS417_00970at 215.574 kb on - strand, within PS417_00970at 215.832 kb on + strand, within PS417_00970at 215.832 kb on + strand, within PS417_00970at 215.833 kb on - strand, within PS417_00970at 215.833 kb on - strand, within PS417_00970at 215.868 kb on + strand, within PS417_00970at 215.869 kb on - strand, within PS417_00970at 215.869 kb on - strand, within PS417_00970at 216.045 kb on + strandat 216.046 kb on - strandat 216.186 kb on + strand, within PS417_00975at 216.186 kb on + strand, within PS417_00975at 216.491 kb on - strandat 216.494 kb on + strandat 216.494 kb on + strandat 216.495 kb on - strandat 216.495 kb on - strandat 216.496 kb on + strandat 216.980 kb on + strand, within PS417_00985at 217.010 kb on + strand, within PS417_00985at 217.034 kb on + strand, within PS417_00985at 217.257 kb on - strand, within PS417_00985

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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215,239 - +0.6
215,448 + PS417_00970 0.26 -0.2
215,449 - PS417_00970 0.26 +0.3
215,547 + PS417_00970 0.39 -0.1
215,548 - PS417_00970 0.39 -0.3
215,574 - PS417_00970 0.42 +0.2
215,832 + PS417_00970 0.75 +2.1
215,832 + PS417_00970 0.75 -1.9
215,833 - PS417_00970 0.76 -2.8
215,833 - PS417_00970 0.76 -0.3
215,868 + PS417_00970 0.80 +0.2
215,869 - PS417_00970 0.80 -0.9
215,869 - PS417_00970 0.80 -0.6
216,045 + +1.2
216,046 - +1.9
216,186 + PS417_00975 0.46 +0.2
216,186 + PS417_00975 0.46 -1.5
216,491 - -0.0
216,494 + +0.2
216,494 + +0.2
216,495 - +0.2
216,495 - -1.6
216,496 + +1.6
216,980 + PS417_00985 0.42 -0.6
217,010 + PS417_00985 0.44 +0.9
217,034 + PS417_00985 0.46 -1.6
217,257 - PS417_00985 0.65 -0.9

Or see this region's nucleotide sequence