Strain Fitness in Pseudomonas simiae WCS417 around PS417_00900
Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Polymyxin B sulfate 0.003 mg/ml |
---|---|---|---|---|---|
remove | |||||
200,043 | + | PS417_00895 | 0.56 | -1.5 | |
200,074 | + | PS417_00895 | 0.58 | -0.1 | |
200,074 | + | +0.2 | |||
200,074 | + | PS417_00895 | 0.58 | +0.3 | |
200,117 | - | PS417_00895 | 0.61 | -0.4 | |
200,134 | + | PS417_00895 | 0.63 | -1.0 | |
200,135 | - | PS417_00895 | 0.63 | +2.3 | |
200,473 | + | PS417_00895 | 0.86 | -0.3 | |
200,473 | + | PS417_00895 | 0.86 | -2.6 | |
200,473 | + | PS417_00895 | 0.86 | -0.2 | |
200,474 | - | PS417_00895 | 0.86 | -0.2 | |
200,474 | - | PS417_00895 | 0.86 | +0.4 | |
200,479 | + | PS417_00895 | 0.86 | -0.3 | |
200,653 | + | +1.5 | |||
200,653 | + | -0.3 | |||
200,653 | + | +0.1 | |||
200,653 | + | -1.1 | |||
200,654 | - | +0.9 | |||
200,809 | + | +0.2 | |||
200,809 | + | -1.8 | |||
201,103 | + | PS417_00900 | 0.19 | +0.2 | |
201,112 | + | PS417_00900 | 0.20 | +0.5 | |
201,112 | + | PS417_00900 | 0.20 | +0.2 | |
201,710 | - | PS417_00900 | 0.67 | -2.6 | |
201,748 | + | PS417_00900 | 0.70 | -0.8 | |
201,749 | - | PS417_00900 | 0.70 | -1.2 | |
202,129 | + | +0.1 | |||
202,217 | + | -1.4 | |||
202,238 | + | +0.4 | |||
202,296 | + | +0.2 | |||
202,679 | + | PS417_00905 | 0.34 | +1.0 | |
202,679 | + | PS417_00905 | 0.34 | -0.3 | |
202,940 | - | PS417_00905 | 0.55 | -0.1 | |
203,117 | + | PS417_00905 | 0.70 | +0.1 |
Or see this region's nucleotide sequence