Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08325 and PS417_08330 are separated by 2 nucleotides PS417_08330 and PS417_08335 are separated by 201 nucleotides PS417_08335 and PS417_08340 are separated by 19 nucleotides
PS417_08325: PS417_08325 - acyl-CoA thioesterase, at 1,823,175 to 1,823,972
_08325
PS417_08330: PS417_08330 - terminase, at 1,823,975 to 1,824,337
_08330
PS417_08335: PS417_08335 - hypothetical protein, at 1,824,539 to 1,824,826
_08335
PS417_08340: PS417_08340 - type IV secretion protein Rhs, at 1,824,846 to 1,829,564
_08340
Position (kb)
1824
1825 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1823.568 kb on + strand at 1823.569 kb on - strand, within PS417_08325 at 1823.569 kb on - strand, within PS417_08325 at 1823.648 kb on + strand, within PS417_08325 at 1823.720 kb on + strand, within PS417_08325 at 1824.020 kb on + strand, within PS417_08330 at 1824.020 kb on + strand, within PS417_08330 at 1824.021 kb on - strand, within PS417_08330 at 1824.119 kb on - strand, within PS417_08330 at 1824.291 kb on + strand, within PS417_08330 at 1824.295 kb on + strand, within PS417_08330 at 1824.295 kb on + strand, within PS417_08330 at 1824.380 kb on + strand at 1824.380 kb on + strand at 1824.380 kb on + strand at 1824.381 kb on - strand at 1824.428 kb on + strand at 1824.509 kb on + strand at 1824.509 kb on + strand at 1824.547 kb on - strand at 1824.551 kb on + strand at 1824.552 kb on - strand at 1824.552 kb on - strand at 1824.618 kb on + strand, within PS417_08335 at 1824.618 kb on + strand at 1824.619 kb on - strand, within PS417_08335 at 1824.636 kb on - strand, within PS417_08335 at 1824.718 kb on - strand, within PS417_08335 at 1824.857 kb on - strand at 1824.891 kb on + strand at 1824.892 kb on - strand at 1824.892 kb on - strand at 1824.892 kb on - strand at 1824.892 kb on - strand at 1824.937 kb on - strand at 1825.001 kb on + strand at 1825.006 kb on - strand at 1825.042 kb on + strand at 1825.042 kb on + strand at 1825.043 kb on - strand at 1825.043 kb on - strand at 1825.043 kb on - strand at 1825.055 kb on + strand at 1825.086 kb on + strand at 1825.087 kb on - strand at 1825.091 kb on - strand at 1825.226 kb on + strand at 1825.231 kb on - strand at 1825.283 kb on + strand at 1825.284 kb on - strand at 1825.284 kb on - strand at 1825.284 kb on - strand at 1825.287 kb on + strand at 1825.287 kb on + strand at 1825.319 kb on + strand, within PS417_08340 at 1825.327 kb on + strand, within PS417_08340 at 1825.327 kb on + strand, within PS417_08340 at 1825.328 kb on - strand, within PS417_08340 at 1825.328 kb on - strand, within PS417_08340 at 1825.328 kb on - strand at 1825.333 kb on + strand, within PS417_08340 at 1825.334 kb on - strand, within PS417_08340 at 1825.400 kb on - strand, within PS417_08340 at 1825.418 kb on - strand, within PS417_08340 at 1825.418 kb on - strand, within PS417_08340 at 1825.444 kb on + strand, within PS417_08340 at 1825.444 kb on + strand, within PS417_08340 at 1825.517 kb on - strand, within PS417_08340 at 1825.594 kb on + strand, within PS417_08340 at 1825.661 kb on - strand, within PS417_08340 at 1825.661 kb on - strand, within PS417_08340
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 1,823,568 + +3.3 1,823,569 - PS417_08325 0.49 +0.9 1,823,569 - PS417_08325 0.49 -0.2 1,823,648 + PS417_08325 0.59 -0.5 1,823,720 + PS417_08325 0.68 +0.2 1,824,020 + PS417_08330 0.12 +0.1 1,824,020 + PS417_08330 0.12 +2.3 1,824,021 - PS417_08330 0.13 -0.3 1,824,119 - PS417_08330 0.40 -0.4 1,824,291 + PS417_08330 0.87 +0.2 1,824,295 + PS417_08330 0.88 -2.2 1,824,295 + PS417_08330 0.88 -0.6 1,824,380 + -0.3 1,824,380 + -1.8 1,824,380 + -2.6 1,824,381 - -1.0 1,824,428 + +0.5 1,824,509 + -0.3 1,824,509 + -0.3 1,824,547 - +0.3 1,824,551 + -1.6 1,824,552 - -1.4 1,824,552 - -0.2 1,824,618 + PS417_08335 0.27 -0.8 1,824,618 + +1.7 1,824,619 - PS417_08335 0.28 -3.0 1,824,636 - PS417_08335 0.34 -0.1 1,824,718 - PS417_08335 0.62 -2.9 1,824,857 - -0.4 1,824,891 + -0.1 1,824,892 - -0.1 1,824,892 - +0.1 1,824,892 - +0.2 1,824,892 - -0.3 1,824,937 - -0.7 1,825,001 + +0.2 1,825,006 - -0.6 1,825,042 + -0.6 1,825,042 + -0.5 1,825,043 - -0.1 1,825,043 - +1.0 1,825,043 - +0.1 1,825,055 + +0.0 1,825,086 + +0.0 1,825,087 - +1.5 1,825,091 - -0.3 1,825,226 + -0.9 1,825,231 - -0.0 1,825,283 + -0.6 1,825,284 - +0.8 1,825,284 - -1.1 1,825,284 - +0.1 1,825,287 + -0.1 1,825,287 + +0.5 1,825,319 + PS417_08340 0.10 -0.9 1,825,327 + PS417_08340 0.10 -0.9 1,825,327 + PS417_08340 0.10 -1.0 1,825,328 - PS417_08340 0.10 +0.6 1,825,328 - PS417_08340 0.10 +1.0 1,825,328 - -0.9 1,825,333 + PS417_08340 0.10 -2.4 1,825,334 - PS417_08340 0.10 +1.5 1,825,400 - PS417_08340 0.12 -0.2 1,825,418 - PS417_08340 0.12 -1.0 1,825,418 - PS417_08340 0.12 +1.6 1,825,444 + PS417_08340 0.13 +2.3 1,825,444 + PS417_08340 0.13 +1.0 1,825,517 - PS417_08340 0.14 +0.1 1,825,594 + PS417_08340 0.16 -0.1 1,825,661 - PS417_08340 0.17 +0.4 1,825,661 - PS417_08340 0.17 +1.2
Or see this region's nucleotide sequence