Strain Fitness in Pseudomonas simiae WCS417 around PS417_08335

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,823,568	+				+3.3
1,823,569	-		PS417_08325	0.49	+0.9
1,823,569	-		PS417_08325	0.49	-0.2
1,823,648	+		PS417_08325	0.59	-0.5
1,823,720	+		PS417_08325	0.68	+0.2
1,824,020	+		PS417_08330	0.12	+0.1
1,824,020	+		PS417_08330	0.12	+2.3
1,824,021	-		PS417_08330	0.13	-0.3
1,824,119	-		PS417_08330	0.40	-0.4
1,824,291	+		PS417_08330	0.87	+0.2
1,824,295	+		PS417_08330	0.88	-2.2
1,824,295	+		PS417_08330	0.88	-0.6
1,824,380	+				-0.3
1,824,380	+				-1.8
1,824,380	+				-2.6
1,824,381	-				-1.0
1,824,428	+				+0.5
1,824,509	+				-0.3
1,824,509	+				-0.3
1,824,547	-				+0.3
1,824,551	+				-1.6
1,824,552	-				-1.4
1,824,552	-				-0.2
1,824,618	+		PS417_08335	0.27	-0.8
1,824,618	+				+1.7
1,824,619	-		PS417_08335	0.28	-3.0
1,824,636	-		PS417_08335	0.34	-0.1
1,824,718	-		PS417_08335	0.62	-2.9
1,824,857	-				-0.4
1,824,891	+				-0.1
1,824,892	-				-0.1
1,824,892	-				+0.1
1,824,892	-				+0.2
1,824,892	-				-0.3
1,824,937	-				-0.7
1,825,001	+				+0.2
1,825,006	-				-0.6
1,825,042	+				-0.6
1,825,042	+				-0.5
1,825,043	-				-0.1
1,825,043	-				+1.0
1,825,043	-				+0.1
1,825,055	+				+0.0
1,825,086	+				+0.0
1,825,087	-				+1.5
1,825,091	-				-0.3
1,825,226	+				-0.9
1,825,231	-				-0.0
1,825,283	+				-0.6
1,825,284	-				+0.8
1,825,284	-				-1.1
1,825,284	-				+0.1
1,825,287	+				-0.1
1,825,287	+				+0.5
1,825,319	+		PS417_08340	0.10	-0.9
1,825,327	+		PS417_08340	0.10	-0.9
1,825,327	+		PS417_08340	0.10	-1.0
1,825,328	-		PS417_08340	0.10	+0.6
1,825,328	-		PS417_08340	0.10	+1.0
1,825,328	-				-0.9
1,825,333	+		PS417_08340	0.10	-2.4
1,825,334	-		PS417_08340	0.10	+1.5
1,825,400	-		PS417_08340	0.12	-0.2
1,825,418	-		PS417_08340	0.12	-1.0
1,825,418	-		PS417_08340	0.12	+1.6
1,825,444	+		PS417_08340	0.13	+2.3
1,825,444	+		PS417_08340	0.13	+1.0
1,825,517	-		PS417_08340	0.14	+0.1
1,825,594	+		PS417_08340	0.16	-0.1
1,825,661	-		PS417_08340	0.17	+0.4
1,825,661	-		PS417_08340	0.17	+1.2