Strain Fitness in Pseudomonas simiae WCS417 around PS417_07990

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07975 and PS417_07980 are separated by 71 nucleotidesPS417_07980 and PS417_07985 overlap by 4 nucleotidesPS417_07985 and PS417_07990 are separated by 154 nucleotidesPS417_07990 and PS417_07995 are separated by 1 nucleotides PS417_07975: PS417_07975 - hypothetical protein, at 1,746,682 to 1,747,056 _07975 PS417_07980: PS417_07980 - twitching motility protein PilT, at 1,747,128 to 1,747,523 _07980 PS417_07985: PS417_07985 - AbrB family transcriptional regulator, at 1,747,520 to 1,747,777 _07985 PS417_07990: PS417_07990 - endoribonuclease L-PSP, at 1,747,932 to 1,748,324 _07990 PS417_07995: PS417_07995 - LOG family protein, at 1,748,326 to 1,749,699 _07995 Position (kb) 1747 1748 1749Strain fitness (log2 ratio) -2 -1 0 1 2at 1747.187 kb on - strand, within PS417_07980at 1747.187 kb on - strand, within PS417_07980at 1747.225 kb on + strand, within PS417_07980at 1747.225 kb on + strand, within PS417_07980at 1747.225 kb on + strand, within PS417_07980at 1747.509 kb on - strandat 1747.636 kb on + strand, within PS417_07985at 1747.834 kb on + strandat 1747.855 kb on + strandat 1747.856 kb on - strandat 1747.869 kb on + strandat 1747.869 kb on + strandat 1747.869 kb on + strandat 1747.924 kb on + strandat 1747.924 kb on + strandat 1747.924 kb on + strandat 1747.925 kb on - strandat 1747.931 kb on + strandat 1747.932 kb on - strandat 1747.932 kb on - strandat 1747.932 kb on - strandat 1747.932 kb on - strandat 1748.026 kb on - strand, within PS417_07990at 1748.119 kb on + strand, within PS417_07990at 1748.120 kb on - strand, within PS417_07990at 1748.169 kb on + strand, within PS417_07990at 1748.169 kb on + strand, within PS417_07990at 1748.169 kb on + strand, within PS417_07990at 1748.169 kb on + strand, within PS417_07990at 1748.169 kb on + strand, within PS417_07990at 1748.170 kb on - strand, within PS417_07990at 1748.354 kb on + strandat 1748.354 kb on + strandat 1748.354 kb on + strandat 1748.355 kb on - strandat 1748.404 kb on + strandat 1748.405 kb on - strandat 1748.494 kb on + strand, within PS417_07995at 1748.494 kb on + strand, within PS417_07995at 1748.495 kb on - strand, within PS417_07995at 1749.197 kb on + strand, within PS417_07995at 1749.197 kb on + strand, within PS417_07995at 1749.197 kb on + strand, within PS417_07995at 1749.198 kb on - strand, within PS417_07995at 1749.198 kb on - strand, within PS417_07995at 1749.198 kb on - strand, within PS417_07995at 1749.203 kb on + strand, within PS417_07995at 1749.204 kb on - strand, within PS417_07995at 1749.269 kb on - strand, within PS417_07995at 1749.302 kb on + strand, within PS417_07995at 1749.302 kb on + strand, within PS417_07995at 1749.303 kb on - strand, within PS417_07995at 1749.303 kb on - strand, within PS417_07995at 1749.303 kb on - strand, within PS417_07995at 1749.303 kb on - strand, within PS417_07995at 1749.303 kb on - strand, within PS417_07995

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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1,747,187 - PS417_07980 0.15 +0.1
1,747,187 - PS417_07980 0.15 +0.6
1,747,225 + PS417_07980 0.24 +0.1
1,747,225 + PS417_07980 0.24 +0.3
1,747,225 + PS417_07980 0.24 +0.2
1,747,509 - -2.1
1,747,636 + PS417_07985 0.45 -0.5
1,747,834 + -1.0
1,747,855 + -0.2
1,747,856 - +0.7
1,747,869 + -0.9
1,747,869 + -2.5
1,747,869 + +0.7
1,747,924 + +0.5
1,747,924 + +1.4
1,747,924 + +0.8
1,747,925 - -1.1
1,747,931 + +0.9
1,747,932 - -0.4
1,747,932 - +2.0
1,747,932 - -0.4
1,747,932 - +1.1
1,748,026 - PS417_07990 0.24 -0.0
1,748,119 + PS417_07990 0.48 +0.9
1,748,120 - PS417_07990 0.48 +0.9
1,748,169 + PS417_07990 0.60 +0.3
1,748,169 + PS417_07990 0.60 +1.1
1,748,169 + PS417_07990 0.60 -0.4
1,748,169 + PS417_07990 0.60 +0.3
1,748,169 + PS417_07990 0.60 +0.3
1,748,170 - PS417_07990 0.61 -1.4
1,748,354 + +1.9
1,748,354 + +0.1
1,748,354 + +0.2
1,748,355 - -1.4
1,748,404 + -0.0
1,748,405 - -0.9
1,748,494 + PS417_07995 0.12 -0.2
1,748,494 + PS417_07995 0.12 -0.2
1,748,495 - PS417_07995 0.12 -0.4
1,749,197 + PS417_07995 0.63 +0.0
1,749,197 + PS417_07995 0.63 -2.3
1,749,197 + PS417_07995 0.63 -0.9
1,749,198 - PS417_07995 0.63 +1.7
1,749,198 - PS417_07995 0.63 -2.0
1,749,198 - PS417_07995 0.63 -1.1
1,749,203 + PS417_07995 0.64 -1.4
1,749,204 - PS417_07995 0.64 -0.2
1,749,269 - PS417_07995 0.69 -0.9
1,749,302 + PS417_07995 0.71 -1.2
1,749,302 + PS417_07995 0.71 +0.7
1,749,303 - PS417_07995 0.71 +0.4
1,749,303 - PS417_07995 0.71 +1.3
1,749,303 - PS417_07995 0.71 -0.4
1,749,303 - PS417_07995 0.71 -0.5
1,749,303 - PS417_07995 0.71 -1.4

Or see this region's nucleotide sequence