Strain Fitness in Pseudomonas simiae WCS417 around PS417_07915

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,733,402	+		PS417_07910	0.20	-0.8
1,733,402	+		PS417_07910	0.20	+0.1
1,733,403	-		PS417_07910	0.20	-1.1
1,733,403	-		PS417_07910	0.20	+0.6
1,733,403	-		PS417_07910	0.20	+1.4
1,733,412	+		PS417_07910	0.21	+0.6
1,733,412	+		PS417_07910	0.21	-0.3
1,733,412	+		PS417_07910	0.21	+0.2
1,733,413	-		PS417_07910	0.21	-0.8
1,733,517	+		PS417_07910	0.30	+0.3
1,733,518	-		PS417_07910	0.30	+0.3
1,733,518	-		PS417_07910	0.30	+0.1
1,733,558	+		PS417_07910	0.34	+0.8
1,733,558	+		PS417_07910	0.34	-1.6
1,733,559	-		PS417_07910	0.34	-0.5
1,733,559	-		PS417_07910	0.34	-0.1
1,733,559	-		PS417_07910	0.34	+0.4
1,733,580	+		PS417_07910	0.36	-0.2
1,733,606	+		PS417_07910	0.38	+0.4
1,733,606	+		PS417_07910	0.38	+0.9
1,733,610	+		PS417_07910	0.38	-0.2
1,733,612	+		PS417_07910	0.38	+0.5
1,733,612	+		PS417_07910	0.38	-1.5
1,733,612	+		PS417_07910	0.38	-1.3
1,733,613	-		PS417_07910	0.38	+0.2
1,733,739	+		PS417_07910	0.49	+0.4
1,733,740	-		PS417_07910	0.50	+0.4
1,733,740	-		PS417_07910	0.50	+0.1
1,733,760	+				-1.1
1,733,761	-		PS417_07910	0.51	-3.2
1,733,777	+		PS417_07910	0.53	+0.3
1,733,779	+		PS417_07910	0.53	+0.0
1,733,779	+		PS417_07910	0.53	+0.3
1,733,779	+				+0.1
1,733,780	-		PS417_07910	0.53	+0.6
1,733,780	-		PS417_07910	0.53	-0.1
1,733,780	-		PS417_07910	0.53	-0.4
1,733,780	-		PS417_07910	0.53	+0.2
1,733,780	-		PS417_07910	0.53	-0.3
1,733,780	-		PS417_07910	0.53	-0.1
1,733,910	+		PS417_07910	0.64	-1.6
1,733,910	+		PS417_07910	0.64	-0.1
1,733,910	+		PS417_07910	0.64	-0.3
1,733,910	+		PS417_07910	0.64	+0.6
1,733,911	-		PS417_07910	0.64	+0.9
1,733,911	-		PS417_07910	0.64	+0.1
1,733,911	-		PS417_07910	0.64	-0.1
1,733,911	-		PS417_07910	0.64	+0.1
1,733,980	+		PS417_07910	0.71	-0.3
1,733,980	+		PS417_07910	0.71	+0.3
1,733,981	-		PS417_07910	0.71	-0.1
1,733,981	-		PS417_07910	0.71	-0.2
1,734,059	-		PS417_07910	0.77	-0.1
1,734,059	-		PS417_07910	0.77	+0.7
1,734,060	+				+1.1
1,734,060	+		PS417_07910	0.77	-1.4
1,734,061	-		PS417_07910	0.78	+1.1
1,734,134	+		PS417_07910	0.84	-0.1
1,734,212	+				-0.9
1,734,243	+				+0.1
1,734,243	+				-0.3
1,734,319	+				-0.8
1,734,319	+				-0.1
1,734,320	-				-0.9
1,734,350	-				+0.1
1,734,411	-				+0.1
1,734,445	+				+0.7
1,734,445	+				+0.1
1,734,445	+				+0.3
1,734,445	+				-1.3
1,734,445	+				+1.5
1,734,559	-		PS417_07915	0.18	-0.9
1,734,641	+		PS417_07915	0.25	-0.4
1,734,641	+		PS417_07915	0.25	+1.9
1,734,642	-		PS417_07915	0.25	+0.3
1,734,643	+				-1.3
1,734,644	-		PS417_07915	0.25	+0.1
1,734,644	-		PS417_07915	0.25	+2.5
1,734,644	-		PS417_07915	0.25	-0.2
1,734,691	+		PS417_07915	0.29	+0.7
1,734,692	-		PS417_07915	0.29	+0.3
1,734,776	-		PS417_07915	0.36	-0.8
1,734,776	-		PS417_07915	0.36	-0.0
1,734,776	-		PS417_07915	0.36	-0.3
1,734,776	-		PS417_07915	0.36	-0.0
1,734,781	+		PS417_07915	0.36	+2.9
1,734,782	-		PS417_07915	0.36	-0.2
1,734,785	+		PS417_07915	0.37	+0.5
1,734,785	+		PS417_07915	0.37	-1.8
1,734,785	+		PS417_07915	0.37	+0.6
1,734,785	+		PS417_07915	0.37	+2.3
1,734,786	-		PS417_07915	0.37	-0.0
1,734,786	-		PS417_07915	0.37	-1.3
1,734,786	-		PS417_07915	0.37	+0.9
1,734,829	+		PS417_07915	0.40	+0.3
1,734,829	+		PS417_07915	0.40	+0.3
1,734,830	-		PS417_07915	0.40	-2.4
1,734,830	-		PS417_07915	0.40	+0.3
1,734,830	-		PS417_07915	0.40	+0.3
1,734,830	-		PS417_07915	0.40	-0.9
1,734,923	+		PS417_07915	0.48	-0.7
1,734,924	-		PS417_07915	0.48	+0.1
1,735,019	+		PS417_07915	0.56	+0.1
1,735,020	-		PS417_07915	0.56	+3.6
1,735,034	+		PS417_07915	0.58	-0.2
1,735,035	-		PS417_07915	0.58	+0.1
1,735,110	+		PS417_07915	0.64	+1.0
1,735,209	+		PS417_07915	0.72	+0.2
1,735,213	+		PS417_07915	0.73	-0.9
1,735,213	+		PS417_07915	0.73	+0.3
1,735,213	+		PS417_07915	0.73	-2.6
1,735,213	+		PS417_07915	0.73	+1.3
1,735,213	+				-0.3
1,735,214	-		PS417_07915	0.73	-0.4
1,735,214	-		PS417_07915	0.73	+1.7
1,735,214	-				+0.7
1,735,214	-				+0.5
1,735,267	-		PS417_07915	0.77	-0.6
1,735,267	-		PS417_07915	0.77	+0.7
1,735,267	-		PS417_07915	0.77	-0.4
1,735,267	-		PS417_07915	0.77	+1.5
1,735,322	+		PS417_07915	0.82	+0.1
1,735,448	+				+1.5
1,735,482	-				+0.2
1,735,483	+				+0.5
1,735,542	-				+1.0
1,735,542	-				-0.7
1,735,576	-		PS417_07920	0.11	+0.7
1,735,591	+				-1.1
1,735,591	+		PS417_07920	0.15	+0.1
1,735,598	-		PS417_07920	0.18	+0.0
1,735,623	+		PS417_07920	0.25	+1.5
1,735,642	+		PS417_07920	0.31	+0.5
1,735,643	-		PS417_07920	0.31	+0.7
1,735,709	-		PS417_07920	0.51	+2.1
1,735,768	+		PS417_07920	0.69	-0.1
1,735,770	+		PS417_07920	0.70	-0.1
1,735,915	+				-0.2
1,735,916	-				-0.2
1,736,067	-				+0.1
1,736,112	+				-0.1
1,736,113	-				-0.5
1,736,225	-				-0.7
1,736,225	-				-0.7
1,736,225	-				-0.3
1,736,257	+				-0.6
1,736,312	+				+0.2
1,736,313	-				-0.1
1,736,313	-				+0.1
1,736,313	-				+0.2
1,736,313	-				-0.1
1,736,313	-				+0.1
1,736,314	+				-0.3
1,736,315	-				+1.4
1,736,315	-				+1.7
1,736,363	+				-0.2
1,736,364	-				+0.7