Strain Fitness in Pseudomonas simiae WCS417 around PS417_07805

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,715,142	+				+0.0
1,715,143	-				+1.1
1,715,143	-				+0.1
1,715,243	+		PS417_07800	0.18	-0.2
1,715,243	+		PS417_07800	0.18	-0.5
1,715,243	+		PS417_07800	0.18	+0.6
1,715,254	+		PS417_07800	0.19	-0.3
1,715,255	-		PS417_07800	0.19	-1.1
1,715,298	+		PS417_07800	0.24	+2.1
1,715,299	-		PS417_07800	0.24	+0.1
1,715,356	+		PS417_07800	0.30	-0.6
1,715,357	-		PS417_07800	0.30	-0.0
1,715,357	-		PS417_07800	0.30	+0.4
1,715,357	-		PS417_07800	0.30	-2.2
1,715,357	-		PS417_07800	0.30	-2.2
1,715,366	-		PS417_07800	0.31	-0.9
1,715,421	+		PS417_07800	0.37	-1.1
1,715,421	+		PS417_07800	0.37	-0.1
1,715,422	-		PS417_07800	0.37	+0.4
1,715,422	-		PS417_07800	0.37	-0.9
1,715,428	-		PS417_07800	0.37	+0.1
1,715,486	+		PS417_07800	0.44	-0.5
1,715,487	-		PS417_07800	0.44	-0.1
1,715,521	+		PS417_07800	0.47	+2.0
1,715,576	-				+4.3
1,715,611	-		PS417_07800	0.57	-0.1
1,715,643	+				-1.1
1,715,643	+		PS417_07800	0.60	-0.2
1,715,643	+		PS417_07800	0.60	-1.1
1,715,643	+		PS417_07800	0.60	-0.2
1,715,643	+		PS417_07800	0.60	+0.4
1,715,643	+		PS417_07800	0.60	+2.0
1,715,644	-		PS417_07800	0.60	+0.9
1,715,644	-		PS417_07800	0.60	-1.4
1,715,644	-		PS417_07800	0.60	+0.1
1,715,745	+		PS417_07800	0.71	-0.4
1,715,750	+		PS417_07800	0.71	+0.8
1,715,783	-		PS417_07800	0.75	+1.0
1,715,788	+		PS417_07800	0.75	-2.0
1,715,789	-		PS417_07800	0.76	-0.1
1,715,789	-		PS417_07800	0.76	-0.3
1,715,789	-		PS417_07800	0.76	-0.3
1,715,868	-		PS417_07800	0.84	-0.3
1,715,937	+				+0.8
1,715,949	-				+2.3
1,715,949	-				+0.2
1,715,969	+				+0.5
1,715,969	+				+0.2
1,715,970	-				-1.7
1,715,970	-				-1.1
1,716,027	+				+1.1
1,716,027	+				-0.9
1,716,027	+				+0.7
1,716,038	+				+0.1
1,716,038	+				-0.2
1,716,038	+				+0.6
1,716,038	+				+0.7
1,716,039	-				+0.6
1,716,039	-				-1.4
1,716,161	+				+0.9
1,716,166	+				+1.9
1,716,166	+				-0.3
1,716,246	+		PS417_07805	0.15	-0.3
1,716,246	+		PS417_07805	0.15	+1.4
1,716,246	+		PS417_07805	0.15	+2.1
1,716,246	+				+1.1
1,716,246	+		PS417_07805	0.15	-0.1
1,716,247	-		PS417_07805	0.15	+0.6
1,716,247	-		PS417_07805	0.15	+0.4
1,716,292	+		PS417_07805	0.21	+0.3
1,716,292	+		PS417_07805	0.21	+0.6
1,716,293	-		PS417_07805	0.22	+1.0
1,716,293	-		PS417_07805	0.22	-0.3
1,716,295	+		PS417_07805	0.22	-0.0
1,716,296	-		PS417_07805	0.22	-0.2
1,716,352	-		PS417_07805	0.30	+0.5
1,716,367	+		PS417_07805	0.32	+0.7
1,716,367	+		PS417_07805	0.32	+1.7
1,716,368	-		PS417_07805	0.32	-0.5
1,716,660	-				+0.4
1,716,691	+		PS417_07805	0.77	+0.4
1,716,726	+		PS417_07805	0.82	-0.3
1,716,728	+		PS417_07805	0.83	+0.4
1,716,732	+		PS417_07805	0.83	-0.6
1,716,733	-		PS417_07805	0.83	-0.4
1,716,733	-		PS417_07805	0.83	+0.7
1,716,733	-				+0.7
1,716,733	-		PS417_07805	0.83	+0.4
1,716,768	+		PS417_07805	0.88	+0.1
1,716,768	+		PS417_07805	0.88	+1.2
1,716,768	+		PS417_07805	0.88	+0.6
1,716,768	+		PS417_07805	0.88	+0.2
1,716,808	+				+0.4
1,716,848	+				-0.6
1,716,997	+				-0.5
1,716,997	+				-0.8
1,716,997	+				+0.4
1,716,998	-				-0.6
1,717,139	+		PS417_07810	0.23	+0.5
1,717,140	-		PS417_07810	0.23	+1.7
1,717,142	-		PS417_07810	0.23	+3.2
1,717,142	-		PS417_07810	0.23	-0.6
1,717,142	-		PS417_07810	0.23	+0.0
1,717,154	+		PS417_07810	0.25	+0.7
1,717,207	+		PS417_07810	0.31	+0.2
1,717,297	+		PS417_07810	0.41	-0.5
1,717,348	+		PS417_07810	0.47	+0.4
1,717,354	+		PS417_07810	0.47	-0.2
1,717,355	-		PS417_07810	0.48	+2.5
1,717,392	+		PS417_07810	0.52	+0.9
1,717,426	+		PS417_07810	0.56	+0.4
1,717,477	+		PS417_07810	0.62	+0.1
1,717,477	+		PS417_07810	0.62	+0.9
1,717,498	+		PS417_07810	0.64	-0.4
1,717,617	+		PS417_07810	0.78	-0.7
1,717,618	-		PS417_07810	0.78	+0.4
1,717,618	-		PS417_07810	0.78	-1.1
1,717,618	-		PS417_07810	0.78	-0.0
1,717,763	+				-1.3