Strain Fitness in Pseudomonas putida KT2440 around PP_3892

Experiment: Growth at 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3889 and PP_3890 overlap by 4 nucleotidesPP_3890 and PP_3891 are separated by 148 nucleotidesPP_3891 and PP_3892 overlap by 19 nucleotidesPP_3892 and PP_3893 overlap by 1 nucleotides PP_3889: PP_3889 - putative Phage integrase, at 4,406,545 to 4,407,843 _3889 PP_3890: PP_3890 - conserved protein of unknown function, at 4,407,840 to 4,408,283 _3890 PP_3891: PP_3891 - conserved protein of unknown function, at 4,408,432 to 4,408,728 _3891 PP_3892: PP_3892 - conserved protein of unknown function, at 4,408,710 to 4,408,916 _3892 PP_3893: PP_3893 - putative Phage DNA helicase, at 4,408,916 to 4,410,313 _3893 Position (kb) 4408 4409Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4407.740 kb on + strandat 4407.741 kb on - strandat 4407.871 kb on + strandat 4407.872 kb on - strandat 4407.872 kb on - strandat 4407.925 kb on + strand, within PP_3890at 4407.926 kb on - strand, within PP_3890at 4407.953 kb on - strand, within PP_3890at 4407.953 kb on - strand, within PP_3890at 4408.012 kb on + strand, within PP_3890at 4408.012 kb on + strand, within PP_3890at 4408.013 kb on - strand, within PP_3890at 4408.013 kb on - strand, within PP_3890at 4408.013 kb on - strand, within PP_3890at 4408.013 kb on - strand, within PP_3890at 4408.024 kb on + strand, within PP_3890at 4408.024 kb on + strand, within PP_3890at 4408.025 kb on - strand, within PP_3890at 4408.135 kb on + strand, within PP_3890at 4408.135 kb on + strand, within PP_3890at 4408.136 kb on - strand, within PP_3890at 4408.136 kb on - strand, within PP_3890at 4408.147 kb on + strand, within PP_3890at 4408.148 kb on - strand, within PP_3890at 4408.148 kb on - strand, within PP_3890at 4408.268 kb on + strandat 4408.269 kb on - strandat 4408.269 kb on - strandat 4408.303 kb on + strandat 4408.303 kb on + strandat 4408.303 kb on + strandat 4408.304 kb on - strandat 4408.423 kb on + strandat 4408.424 kb on - strandat 4408.429 kb on + strandat 4408.429 kb on + strandat 4408.430 kb on - strandat 4408.430 kb on - strandat 4408.519 kb on + strand, within PP_3891at 4408.625 kb on + strand, within PP_3891at 4408.625 kb on + strand, within PP_3891at 4408.625 kb on + strand, within PP_3891at 4408.888 kb on + strand, within PP_3892at 4409.306 kb on - strand, within PP_3893at 4409.306 kb on - strand, within PP_3893at 4409.370 kb on + strand, within PP_3893at 4409.370 kb on + strand, within PP_3893at 4409.370 kb on + strand, within PP_3893at 4409.371 kb on - strand, within PP_3893at 4409.371 kb on - strand, within PP_3893at 4409.371 kb on - strand, within PP_3893at 4409.371 kb on - strand, within PP_3893at 4409.371 kb on - strand, within PP_3893at 4409.468 kb on + strand, within PP_3893at 4409.468 kb on + strand, within PP_3893at 4409.468 kb on + strand, within PP_3893at 4409.468 kb on + strand, within PP_3893at 4409.469 kb on - strand, within PP_3893at 4409.469 kb on - strand, within PP_3893at 4409.564 kb on - strand, within PP_3893at 4409.662 kb on - strand, within PP_3893at 4409.791 kb on + strand, within PP_3893

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 10C
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4,407,740 + +0.5
4,407,741 - -3.0
4,407,871 + -0.2
4,407,872 - -4.7
4,407,872 - -4.1
4,407,925 + PP_3890 0.19 +1.0
4,407,926 - PP_3890 0.19 +0.1
4,407,953 - PP_3890 0.25 -0.7
4,407,953 - PP_3890 0.25 -0.0
4,408,012 + PP_3890 0.39 -0.2
4,408,012 + PP_3890 0.39 +0.1
4,408,013 - PP_3890 0.39 -1.1
4,408,013 - PP_3890 0.39 -0.5
4,408,013 - PP_3890 0.39 -1.5
4,408,013 - PP_3890 0.39 -1.1
4,408,024 + PP_3890 0.41 +0.9
4,408,024 + PP_3890 0.41 +0.1
4,408,025 - PP_3890 0.42 -1.4
4,408,135 + PP_3890 0.66 +0.2
4,408,135 + PP_3890 0.66 -0.5
4,408,136 - PP_3890 0.67 -0.4
4,408,136 - PP_3890 0.67 -1.0
4,408,147 + PP_3890 0.69 -1.0
4,408,148 - PP_3890 0.69 -0.1
4,408,148 - PP_3890 0.69 +0.3
4,408,268 + -1.7
4,408,269 - +2.5
4,408,269 - -0.4
4,408,303 + -0.4
4,408,303 + +0.3
4,408,303 + -1.7
4,408,304 - +0.6
4,408,423 + -0.4
4,408,424 - +0.1
4,408,429 + -0.0
4,408,429 + +0.3
4,408,430 - -4.8
4,408,430 - -5.1
4,408,519 + PP_3891 0.29 +0.6
4,408,625 + PP_3891 0.65 -0.4
4,408,625 + PP_3891 0.65 +0.2
4,408,625 + PP_3891 0.65 +0.3
4,408,888 + PP_3892 0.86 +0.5
4,409,306 - PP_3893 0.28 -5.2
4,409,306 - PP_3893 0.28 -4.8
4,409,370 + PP_3893 0.32 -1.0
4,409,370 + PP_3893 0.32 +1.2
4,409,370 + PP_3893 0.32 -0.0
4,409,371 - PP_3893 0.33 -5.2
4,409,371 - PP_3893 0.33 -3.5
4,409,371 - PP_3893 0.33 -4.5
4,409,371 - PP_3893 0.33 -3.6
4,409,371 - PP_3893 0.33 -4.9
4,409,468 + PP_3893 0.39 -0.1
4,409,468 + PP_3893 0.39 -0.0
4,409,468 + PP_3893 0.39 +0.3
4,409,468 + PP_3893 0.39 +0.5
4,409,469 - PP_3893 0.40 -2.5
4,409,469 - PP_3893 0.40 -2.7
4,409,564 - PP_3893 0.46 +0.3
4,409,662 - PP_3893 0.53 +0.3
4,409,791 + PP_3893 0.63 -0.7

Or see this region's nucleotide sequence