Experiment: Growth at 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3764 and PP_3765 are separated by 349 nucleotides PP_3765 and PP_3766 are separated by 224 nucleotides PP_3766 and PP_3767 are separated by 97 nucleotides PP_3767 and PP_3768 are separated by 58 nucleotides
PP_3764: PP_3764 - outer-membrane porin D, at 4,294,071 to 4,295,372
_3764
PP_3765: PP_3765 - H-NS family protein MvaT, at 4,295,722 to 4,296,081
_3765
PP_3766: PP_3766 - Lactoylglutathione lyase, at 4,296,306 to 4,296,833
_3766
PP_3767: PP_3767 - conserved protein of unknown function, at 4,296,931 to 4,297,173
_3767
PP_3768: PP_3768 - putative shikimate 5-dehydrogenase, at 4,297,232 to 4,298,053
_3768
Position (kb) 4296
4297 Strain fitness (log2 ratio) -2
-1
0
1 at 4295.307 kb on + strand at 4295.308 kb on - strand at 4295.308 kb on - strand at 4295.308 kb on - strand at 4295.308 kb on - strand at 4295.390 kb on + strand at 4295.390 kb on + strand at 4295.391 kb on - strand at 4295.391 kb on - strand at 4295.502 kb on + strand at 4295.541 kb on - strand at 4295.573 kb on - strand at 4295.616 kb on - strand at 4295.706 kb on + strand at 4295.718 kb on + strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.719 kb on - strand at 4295.840 kb on + strand, within PP_3765 at 4295.840 kb on + strand, within PP_3765 at 4295.860 kb on + strand, within PP_3765 at 4295.881 kb on - strand, within PP_3765 at 4295.968 kb on + strand, within PP_3765 at 4295.969 kb on - strand, within PP_3765 at 4295.969 kb on - strand, within PP_3765 at 4296.046 kb on + strand at 4296.047 kb on - strand at 4296.047 kb on - strand at 4296.047 kb on - strand at 4296.062 kb on + strand at 4296.095 kb on + strand at 4296.095 kb on + strand at 4296.095 kb on + strand at 4296.096 kb on - strand at 4296.096 kb on - strand at 4296.096 kb on - strand at 4296.131 kb on - strand at 4296.151 kb on - strand at 4296.244 kb on + strand at 4296.244 kb on + strand at 4296.245 kb on - strand at 4296.245 kb on - strand at 4296.429 kb on + strand, within PP_3766 at 4296.495 kb on + strand, within PP_3766 at 4296.495 kb on + strand, within PP_3766 at 4296.627 kb on + strand, within PP_3766 at 4296.831 kb on + strand at 4296.887 kb on + strand at 4296.887 kb on + strand at 4296.887 kb on + strand at 4296.887 kb on + strand at 4296.887 kb on + strand at 4296.888 kb on - strand at 4296.888 kb on - strand at 4296.888 kb on - strand at 4296.888 kb on - strand at 4296.889 kb on + strand at 4296.889 kb on + strand at 4296.889 kb on + strand at 4296.889 kb on + strand at 4296.889 kb on + strand at 4296.889 kb on + strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.890 kb on - strand at 4296.898 kb on - strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.910 kb on + strand at 4296.911 kb on - strand at 4296.924 kb on - strand at 4297.010 kb on - strand, within PP_3767 at 4297.059 kb on + strand, within PP_3767 at 4297.059 kb on + strand, within PP_3767 at 4297.059 kb on + strand, within PP_3767 at 4297.060 kb on - strand, within PP_3767 at 4297.060 kb on - strand, within PP_3767 at 4297.060 kb on - strand, within PP_3767 at 4297.060 kb on - strand, within PP_3767 at 4297.226 kb on + strand at 4297.226 kb on + strand at 4297.226 kb on + strand at 4297.226 kb on + strand at 4297.226 kb on + strand at 4297.226 kb on + strand at 4297.227 kb on - strand at 4297.227 kb on - strand at 4297.227 kb on - strand at 4297.227 kb on - strand at 4297.227 kb on - strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.229 kb on + strand at 4297.230 kb on - strand at 4297.230 kb on - strand at 4297.230 kb on - strand at 4297.233 kb on + strand at 4297.233 kb on + strand at 4297.233 kb on + strand at 4297.233 kb on + strand at 4297.237 kb on + strand at 4297.237 kb on + strand at 4297.296 kb on + strand at 4297.746 kb on + strand, within PP_3768 at 4297.746 kb on + strand, within PP_3768 at 4297.746 kb on + strand, within PP_3768 at 4297.746 kb on + strand, within PP_3768 at 4297.747 kb on - strand, within PP_3768
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 10C remove 4,295,307 + +0.0 4,295,308 - -0.7 4,295,308 - +1.1 4,295,308 - -2.3 4,295,308 - +1.4 4,295,390 + +0.7 4,295,390 + -0.2 4,295,391 - +0.1 4,295,391 - -0.9 4,295,502 + -0.6 4,295,541 - +0.9 4,295,573 - -0.1 4,295,616 - +0.4 4,295,706 + -0.3 4,295,718 + -0.3 4,295,719 - -0.0 4,295,719 - -2.2 4,295,719 - -0.5 4,295,719 - -0.5 4,295,719 - +0.3 4,295,719 - +0.5 4,295,719 - +0.5 4,295,719 - -0.3 4,295,840 + PP_3765 0.33 -0.7 4,295,840 + PP_3765 0.33 -0.2 4,295,860 + PP_3765 0.38 +0.5 4,295,881 - PP_3765 0.44 -1.0 4,295,968 + PP_3765 0.68 +0.4 4,295,969 - PP_3765 0.69 -1.0 4,295,969 - PP_3765 0.69 +0.5 4,296,046 + -2.7 4,296,047 - +0.1 4,296,047 - +0.2 4,296,047 - -0.2 4,296,062 + +0.3 4,296,095 + -0.6 4,296,095 + +0.5 4,296,095 + +0.5 4,296,096 - -0.4 4,296,096 - -0.5 4,296,096 - +0.7 4,296,131 - +0.4 4,296,151 - -0.1 4,296,244 + +0.2 4,296,244 + +0.3 4,296,245 - -0.3 4,296,245 - -0.1 4,296,429 + PP_3766 0.23 +1.1 4,296,495 + PP_3766 0.36 -0.3 4,296,495 + PP_3766 0.36 +0.1 4,296,627 + PP_3766 0.61 +0.8 4,296,831 + +0.7 4,296,887 + +0.5 4,296,887 + +0.0 4,296,887 + -0.0 4,296,887 + +0.7 4,296,887 + +0.4 4,296,888 - -1.3 4,296,888 - -0.1 4,296,888 - +0.0 4,296,888 - -0.3 4,296,889 + +0.2 4,296,889 + -0.5 4,296,889 + +0.5 4,296,889 + +0.0 4,296,889 + +0.3 4,296,889 + +1.5 4,296,890 - -0.1 4,296,890 - +1.0 4,296,890 - +0.5 4,296,890 - -0.4 4,296,890 - +0.3 4,296,890 - +0.3 4,296,890 - +0.1 4,296,898 - +0.2 4,296,910 + -1.0 4,296,910 + -0.2 4,296,910 + +0.4 4,296,910 + -2.1 4,296,910 + -0.6 4,296,910 + +1.0 4,296,910 + +0.5 4,296,911 - -0.3 4,296,924 - -1.5 4,297,010 - PP_3767 0.33 +0.0 4,297,059 + PP_3767 0.53 +0.5 4,297,059 + PP_3767 0.53 -0.6 4,297,059 + PP_3767 0.53 +0.6 4,297,060 - PP_3767 0.53 +0.6 4,297,060 - PP_3767 0.53 +0.2 4,297,060 - PP_3767 0.53 -0.1 4,297,060 - PP_3767 0.53 +0.6 4,297,226 + -1.4 4,297,226 + -1.1 4,297,226 + +0.3 4,297,226 + -1.0 4,297,226 + -0.2 4,297,226 + -0.3 4,297,227 - +0.1 4,297,227 - +0.1 4,297,227 - -0.8 4,297,227 - +0.6 4,297,227 - +0.5 4,297,229 + -1.0 4,297,229 + +0.1 4,297,229 + -1.3 4,297,229 + +0.0 4,297,229 + +0.7 4,297,229 + -1.2 4,297,229 + +0.2 4,297,229 + +0.6 4,297,229 + -0.2 4,297,229 + +0.5 4,297,230 - +0.1 4,297,230 - -0.2 4,297,230 - +0.0 4,297,233 + -0.6 4,297,233 + -0.1 4,297,233 + +0.4 4,297,233 + -0.5 4,297,237 + -1.8 4,297,237 + -0.2 4,297,296 + +0.0 4,297,746 + PP_3768 0.63 -0.6 4,297,746 + PP_3768 0.63 +0.6 4,297,746 + PP_3768 0.63 -0.5 4,297,746 + PP_3768 0.63 +0.3 4,297,747 - PP_3768 0.63 +0.1
Or see this region's nucleotide sequence