Experiment: Growth at 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3754 and PP_3755 are separated by 13 nucleotides PP_3755 and PP_3756 are separated by 12 nucleotides PP_3756 and PP_3757 are separated by 48 nucleotides PP_3757 and PP_3758 are separated by 44 nucleotides
PP_3754: PP_3754 - Beta-ketothiolase BktB, at 4,283,398 to 4,284,582
_3754
PP_3755: PP_3755 - 3-hydroxybutyryl-CoA dehydrogenase, at 4,284,596 to 4,285,444
_3755
PP_3756: PP_3756 - TetR family transcriptional regulator, at 4,285,457 to 4,286,038
_3756
PP_3757: PP_3757 - Chemotaxis protein CheY, at 4,286,087 to 4,286,464
_3757
PP_3758: PP_3758 - Response regulator/sensor histidine kinase, at 4,286,509 to 4,287,735
_3758
Position (kb) 4285
4286
4287 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4284.537 kb on + strand at 4284.824 kb on + strand, within PP_3755 at 4284.825 kb on - strand, within PP_3755 at 4284.946 kb on + strand, within PP_3755 at 4284.946 kb on + strand, within PP_3755 at 4284.946 kb on + strand, within PP_3755 at 4284.946 kb on + strand, within PP_3755 at 4284.947 kb on - strand, within PP_3755 at 4284.947 kb on - strand, within PP_3755 at 4284.947 kb on - strand, within PP_3755 at 4285.086 kb on - strand, within PP_3755 at 4285.362 kb on - strand at 4285.440 kb on - strand at 4285.440 kb on - strand at 4285.601 kb on + strand, within PP_3756 at 4285.601 kb on + strand, within PP_3756 at 4285.634 kb on + strand, within PP_3756 at 4285.655 kb on + strand, within PP_3756 at 4285.655 kb on + strand, within PP_3756 at 4285.655 kb on + strand, within PP_3756 at 4285.847 kb on + strand, within PP_3756 at 4285.847 kb on + strand, within PP_3756 at 4285.847 kb on + strand, within PP_3756 at 4285.924 kb on - strand, within PP_3756 at 4286.123 kb on - strand at 4286.258 kb on - strand, within PP_3757 at 4286.373 kb on + strand, within PP_3757 at 4286.374 kb on - strand at 4286.391 kb on + strand, within PP_3757 at 4286.391 kb on + strand, within PP_3757 at 4286.484 kb on + strand at 4286.484 kb on + strand at 4286.484 kb on + strand at 4286.484 kb on + strand at 4286.484 kb on + strand at 4286.485 kb on - strand at 4286.510 kb on + strand at 4286.511 kb on - strand at 4286.651 kb on + strand, within PP_3758 at 4286.651 kb on + strand, within PP_3758 at 4286.651 kb on + strand, within PP_3758 at 4286.651 kb on + strand, within PP_3758 at 4286.652 kb on - strand, within PP_3758 at 4286.652 kb on - strand, within PP_3758 at 4286.652 kb on - strand, within PP_3758 at 4286.652 kb on - strand, within PP_3758 at 4286.652 kb on - strand, within PP_3758 at 4286.854 kb on + strand, within PP_3758 at 4286.854 kb on + strand, within PP_3758 at 4286.855 kb on - strand, within PP_3758 at 4286.855 kb on - strand, within PP_3758 at 4286.855 kb on - strand, within PP_3758
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 10C remove 4,284,537 + -0.5 4,284,824 + PP_3755 0.27 +0.2 4,284,825 - PP_3755 0.27 -0.5 4,284,946 + PP_3755 0.41 +0.9 4,284,946 + PP_3755 0.41 +0.0 4,284,946 + PP_3755 0.41 -0.1 4,284,946 + PP_3755 0.41 +0.1 4,284,947 - PP_3755 0.41 -1.0 4,284,947 - PP_3755 0.41 -0.6 4,284,947 - PP_3755 0.41 +0.1 4,285,086 - PP_3755 0.58 -0.4 4,285,362 - -0.3 4,285,440 - -0.6 4,285,440 - +0.1 4,285,601 + PP_3756 0.25 +0.4 4,285,601 + PP_3756 0.25 +0.3 4,285,634 + PP_3756 0.30 +1.1 4,285,655 + PP_3756 0.34 -0.3 4,285,655 + PP_3756 0.34 -0.2 4,285,655 + PP_3756 0.34 +0.4 4,285,847 + PP_3756 0.67 -0.2 4,285,847 + PP_3756 0.67 +0.9 4,285,847 + PP_3756 0.67 +1.0 4,285,924 - PP_3756 0.80 -2.8 4,286,123 - -0.0 4,286,258 - PP_3757 0.45 -0.8 4,286,373 + PP_3757 0.76 +0.8 4,286,374 - +0.4 4,286,391 + PP_3757 0.80 +0.3 4,286,391 + PP_3757 0.80 +0.2 4,286,484 + +0.9 4,286,484 + -1.2 4,286,484 + -1.1 4,286,484 + +0.7 4,286,484 + +0.3 4,286,485 - +0.9 4,286,510 + +0.1 4,286,511 - -0.8 4,286,651 + PP_3758 0.12 -1.2 4,286,651 + PP_3758 0.12 +0.3 4,286,651 + PP_3758 0.12 +0.1 4,286,651 + PP_3758 0.12 -0.2 4,286,652 - PP_3758 0.12 -0.0 4,286,652 - PP_3758 0.12 -0.7 4,286,652 - PP_3758 0.12 +0.3 4,286,652 - PP_3758 0.12 +0.2 4,286,652 - PP_3758 0.12 +0.3 4,286,854 + PP_3758 0.28 -0.0 4,286,854 + PP_3758 0.28 -0.0 4,286,855 - PP_3758 0.28 +0.5 4,286,855 - PP_3758 0.28 -1.1 4,286,855 - PP_3758 0.28 -0.2
Or see this region's nucleotide sequence