Strain Fitness in Pseudomonas putida KT2440 around PP_2873

Experiment: Growth at 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2872 and PP_2873 are separated by 70 nucleotidesPP_2873 and PP_5540 are separated by 138 nucleotidesPP_5540 and PP_2874 are separated by 141 nucleotidesPP_2874 and PP_2875 are separated by 46 nucleotides PP_2872: PP_2872 - O-acetylserine/cysteine export transporter, at 3,274,243 to 3,275,127 _2872 PP_2873: PP_2873 - conserved protein of unknown function, UPF0145 family, at 3,275,198 to 3,275,518 _2873 PP_5540: PP_5540 - conserved protein of unknown function, at 3,275,657 to 3,275,845 _5540 PP_2874: PP_2874 - conserved protein of unknown function, at 3,275,987 to 3,276,298 _2874 PP_2875: PP_2875 - conserved protein of unknown function, at 3,276,345 to 3,276,695 _2875 Position (kb) 3275 3276Strain fitness (log2 ratio) -1 0 1at 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.484 kb on - strand, within PP_2872at 3274.484 kb on - strand, within PP_2872at 3274.484 kb on - strand, within PP_2872at 3274.720 kb on - strand, within PP_2872at 3274.848 kb on + strand, within PP_2872at 3274.848 kb on + strand, within PP_2872at 3274.849 kb on - strand, within PP_2872at 3274.849 kb on - strand, within PP_2872at 3274.879 kb on + strand, within PP_2872at 3274.879 kb on + strand, within PP_2872at 3274.880 kb on - strand, within PP_2872at 3274.880 kb on - strand, within PP_2872at 3275.082 kb on - strandat 3275.082 kb on - strandat 3275.134 kb on + strandat 3275.134 kb on + strandat 3275.135 kb on - strandat 3275.159 kb on - strandat 3275.246 kb on + strand, within PP_2873at 3275.246 kb on + strand, within PP_2873at 3275.285 kb on + strand, within PP_2873at 3275.286 kb on - strand, within PP_2873at 3275.286 kb on - strand, within PP_2873at 3275.286 kb on - strand, within PP_2873at 3275.464 kb on - strand, within PP_2873at 3275.484 kb on + strand, within PP_2873at 3275.484 kb on + strand, within PP_2873at 3275.516 kb on + strandat 3275.516 kb on + strandat 3275.517 kb on - strandat 3275.913 kb on + strandat 3275.913 kb on + strandat 3276.014 kb on + strandat 3276.014 kb on + strandat 3276.140 kb on + strand, within PP_2874at 3276.141 kb on - strand, within PP_2874at 3276.141 kb on - strand, within PP_2874at 3276.173 kb on + strand, within PP_2874at 3276.173 kb on + strand, within PP_2874at 3276.173 kb on + strand, within PP_2874at 3276.173 kb on + strand, within PP_2874at 3276.173 kb on + strand, within PP_2874at 3276.174 kb on - strand, within PP_2874at 3276.174 kb on - strand, within PP_2874at 3276.174 kb on - strand, within PP_2874at 3276.174 kb on - strand, within PP_2874at 3276.174 kb on - strand, within PP_2874at 3276.174 kb on - strand, within PP_2874at 3276.174 kb on - strand, within PP_2874at 3276.177 kb on - strand, within PP_2874at 3276.312 kb on - strandat 3276.466 kb on + strand, within PP_2875at 3276.485 kb on - strand, within PP_2875

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 10C
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3,274,483 + PP_2872 0.27 +0.1
3,274,483 + PP_2872 0.27 +0.8
3,274,483 + PP_2872 0.27 -0.2
3,274,483 + PP_2872 0.27 +0.0
3,274,483 + PP_2872 0.27 -1.1
3,274,484 - PP_2872 0.27 -0.3
3,274,484 - PP_2872 0.27 -0.1
3,274,484 - PP_2872 0.27 +1.1
3,274,720 - PP_2872 0.54 -1.0
3,274,848 + PP_2872 0.68 +0.6
3,274,848 + PP_2872 0.68 -0.1
3,274,849 - PP_2872 0.68 +0.1
3,274,849 - PP_2872 0.68 -0.3
3,274,879 + PP_2872 0.72 -0.1
3,274,879 + PP_2872 0.72 -0.1
3,274,880 - PP_2872 0.72 +0.0
3,274,880 - PP_2872 0.72 -0.2
3,275,082 - -0.8
3,275,082 - +0.7
3,275,134 + -0.6
3,275,134 + +0.1
3,275,135 - -0.5
3,275,159 - -0.3
3,275,246 + PP_2873 0.15 +0.3
3,275,246 + PP_2873 0.15 +0.1
3,275,285 + PP_2873 0.27 -0.1
3,275,286 - PP_2873 0.27 +1.6
3,275,286 - PP_2873 0.27 -0.3
3,275,286 - PP_2873 0.27 -0.2
3,275,464 - PP_2873 0.83 +1.1
3,275,484 + PP_2873 0.89 -0.2
3,275,484 + PP_2873 0.89 +1.0
3,275,516 + -0.4
3,275,516 + -0.9
3,275,517 - -0.9
3,275,913 + -0.7
3,275,913 + -0.9
3,276,014 + +0.4
3,276,014 + -0.8
3,276,140 + PP_2874 0.49 -0.7
3,276,141 - PP_2874 0.49 -0.8
3,276,141 - PP_2874 0.49 -0.3
3,276,173 + PP_2874 0.60 +0.2
3,276,173 + PP_2874 0.60 -0.6
3,276,173 + PP_2874 0.60 +0.4
3,276,173 + PP_2874 0.60 -0.2
3,276,173 + PP_2874 0.60 +0.8
3,276,174 - PP_2874 0.60 +0.6
3,276,174 - PP_2874 0.60 +0.1
3,276,174 - PP_2874 0.60 -0.6
3,276,174 - PP_2874 0.60 -0.4
3,276,174 - PP_2874 0.60 -0.8
3,276,174 - PP_2874 0.60 -0.1
3,276,174 - PP_2874 0.60 -0.4
3,276,177 - PP_2874 0.61 +0.9
3,276,312 - -0.1
3,276,466 + PP_2875 0.34 -0.2
3,276,485 - PP_2875 0.40 +1.1

Or see this region's nucleotide sequence