Strain Fitness in Pseudomonas putida KT2440 around PP_2619

Experiment: Growth at 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2617 and PP_2618 are separated by 55 nucleotidesPP_2618 and PP_2619 overlap by 4 nucleotidesPP_2619 and PP_2620 overlap by 4 nucleotides PP_2617: PP_2617 - conserved protein of unknown function, at 2,993,074 to 2,994,411 _2617 PP_2618: PP_2618 - conserved exported protein of unknown function, at 2,994,467 to 2,995,264 _2618 PP_2619: PP_2619 - FHA domain protein, at 2,995,261 to 2,995,830 _2619 PP_2620: PP_2620 - conserved protein of unknown function, at 2,995,827 to 2,996,843 _2620 PP_2621: PP_2621 - conserved protein of unknown function, at 2,996,807 to 2,998,573 _2621 Position (kb) 2995 2996Strain fitness (log2 ratio) -2 -1 0 1at 2994.551 kb on + strand, within PP_2618at 2994.552 kb on - strand, within PP_2618at 2994.552 kb on - strand, within PP_2618at 2994.643 kb on - strand, within PP_2618at 2994.643 kb on - strand, within PP_2618at 2994.643 kb on - strand, within PP_2618at 2994.669 kb on + strand, within PP_2618at 2994.669 kb on + strand, within PP_2618at 2994.670 kb on - strand, within PP_2618at 2994.680 kb on - strand, within PP_2618at 2994.687 kb on + strand, within PP_2618at 2994.687 kb on + strand, within PP_2618at 2994.687 kb on + strand, within PP_2618at 2994.687 kb on + strand, within PP_2618at 2994.687 kb on + strand, within PP_2618at 2994.688 kb on - strand, within PP_2618at 2994.688 kb on - strand, within PP_2618at 2994.691 kb on + strand, within PP_2618at 2994.691 kb on + strand, within PP_2618at 2994.692 kb on - strand, within PP_2618at 2994.692 kb on - strand, within PP_2618at 2994.726 kb on - strand, within PP_2618at 2994.733 kb on - strand, within PP_2618at 2994.858 kb on + strand, within PP_2618at 2994.956 kb on + strand, within PP_2618at 2994.961 kb on - strand, within PP_2618at 2994.996 kb on + strand, within PP_2618at 2995.269 kb on - strandat 2995.520 kb on + strand, within PP_2619at 2995.520 kb on + strand, within PP_2619at 2995.521 kb on - strand, within PP_2619at 2995.539 kb on - strand, within PP_2619at 2995.543 kb on - strandat 2995.543 kb on - strand, within PP_2619at 2995.624 kb on - strand, within PP_2619at 2995.624 kb on - strand, within PP_2619at 2995.776 kb on + strandat 2995.904 kb on - strandat 2995.972 kb on + strand, within PP_2620at 2995.973 kb on - strand, within PP_2620at 2995.973 kb on - strand, within PP_2620at 2996.260 kb on - strand, within PP_2620at 2996.422 kb on + strand, within PP_2620at 2996.422 kb on + strand, within PP_2620at 2996.422 kb on + strand, within PP_2620at 2996.422 kb on + strand, within PP_2620at 2996.422 kb on + strand, within PP_2620at 2996.425 kb on + strand, within PP_2620at 2996.425 kb on + strand, within PP_2620at 2996.431 kb on + strand, within PP_2620at 2996.431 kb on + strandat 2996.444 kb on + strand, within PP_2620at 2996.468 kb on - strand, within PP_2620at 2996.468 kb on - strand, within PP_2620at 2996.543 kb on - strand, within PP_2620at 2996.545 kb on + strand, within PP_2620at 2996.546 kb on - strand, within PP_2620at 2996.638 kb on + strand, within PP_2620at 2996.639 kb on - strand, within PP_2620at 2996.777 kb on - strandat 2996.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 10C
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2,994,551 + PP_2618 0.11 +0.5
2,994,552 - PP_2618 0.11 -0.2
2,994,552 - PP_2618 0.11 +0.5
2,994,643 - PP_2618 0.22 -0.4
2,994,643 - PP_2618 0.22 -0.2
2,994,643 - PP_2618 0.22 -0.4
2,994,669 + PP_2618 0.25 -0.6
2,994,669 + PP_2618 0.25 -0.3
2,994,670 - PP_2618 0.25 +0.1
2,994,680 - PP_2618 0.27 -0.9
2,994,687 + PP_2618 0.28 +0.3
2,994,687 + PP_2618 0.28 -2.1
2,994,687 + PP_2618 0.28 +0.1
2,994,687 + PP_2618 0.28 +0.2
2,994,687 + PP_2618 0.28 +0.5
2,994,688 - PP_2618 0.28 -0.5
2,994,688 - PP_2618 0.28 -0.5
2,994,691 + PP_2618 0.28 -0.7
2,994,691 + PP_2618 0.28 -1.2
2,994,692 - PP_2618 0.28 -0.1
2,994,692 - PP_2618 0.28 +0.3
2,994,726 - PP_2618 0.32 +0.8
2,994,733 - PP_2618 0.33 +0.6
2,994,858 + PP_2618 0.49 +0.4
2,994,956 + PP_2618 0.61 -0.8
2,994,961 - PP_2618 0.62 +0.6
2,994,996 + PP_2618 0.66 +0.2
2,995,269 - +0.5
2,995,520 + PP_2619 0.45 +0.6
2,995,520 + PP_2619 0.45 +0.3
2,995,521 - PP_2619 0.46 +1.0
2,995,539 - PP_2619 0.49 +1.2
2,995,543 - -0.6
2,995,543 - PP_2619 0.49 +0.1
2,995,624 - PP_2619 0.64 +0.1
2,995,624 - PP_2619 0.64 -0.3
2,995,776 + -0.3
2,995,904 - +0.1
2,995,972 + PP_2620 0.14 +0.0
2,995,973 - PP_2620 0.14 -0.2
2,995,973 - PP_2620 0.14 +0.1
2,996,260 - PP_2620 0.43 +0.9
2,996,422 + PP_2620 0.59 -0.1
2,996,422 + PP_2620 0.59 -0.0
2,996,422 + PP_2620 0.59 -0.1
2,996,422 + PP_2620 0.59 -0.6
2,996,422 + PP_2620 0.59 +0.1
2,996,425 + PP_2620 0.59 -0.4
2,996,425 + PP_2620 0.59 -0.7
2,996,431 + PP_2620 0.59 +0.2
2,996,431 + +1.1
2,996,444 + PP_2620 0.61 -0.6
2,996,468 - PP_2620 0.63 -1.8
2,996,468 - PP_2620 0.63 +0.3
2,996,543 - PP_2620 0.70 -1.1
2,996,545 + PP_2620 0.71 +0.4
2,996,546 - PP_2620 0.71 -0.8
2,996,638 + PP_2620 0.80 +0.2
2,996,639 - PP_2620 0.80 +0.3
2,996,777 - -0.5
2,996,808 + +0.6

Or see this region's nucleotide sequence