Strain Fitness in Pseudomonas putida KT2440 around PP_2247

Experiment: Growth at 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2246 and PP_2247 are separated by 12 nucleotidesPP_2247 and PP_2248 are separated by 112 nucleotides PP_2246: PP_2246 - catabolic D-arginine dehydrogenase, FAD-dependent, at 2,562,263 to 2,563,399 _2246 PP_2247: PP_2247 - putative Endoribonuclease, at 2,563,412 to 2,563,789 _2247 PP_2248: PP_2248 - putative transporter, at 2,563,902 to 2,564,966 _2248 Position (kb) 2563 2564Strain fitness (log2 ratio) -2 -1 0 1 2at 2562.423 kb on - strand, within PP_2246at 2562.423 kb on - strand, within PP_2246at 2562.470 kb on + strand, within PP_2246at 2562.470 kb on + strand, within PP_2246at 2562.470 kb on + strand, within PP_2246at 2562.470 kb on + strand, within PP_2246at 2562.471 kb on - strandat 2562.531 kb on - strand, within PP_2246at 2562.531 kb on - strand, within PP_2246at 2562.531 kb on - strand, within PP_2246at 2562.531 kb on - strand, within PP_2246at 2562.531 kb on - strand, within PP_2246at 2562.705 kb on + strand, within PP_2246at 2562.706 kb on - strand, within PP_2246at 2562.706 kb on - strand, within PP_2246at 2562.791 kb on + strand, within PP_2246at 2562.974 kb on - strand, within PP_2246at 2563.014 kb on - strand, within PP_2246at 2563.115 kb on - strand, within PP_2246at 2563.115 kb on - strand, within PP_2246at 2563.118 kb on + strand, within PP_2246at 2563.118 kb on + strand, within PP_2246at 2563.119 kb on - strand, within PP_2246at 2563.679 kb on + strand, within PP_2247at 2563.679 kb on + strand, within PP_2247at 2563.679 kb on + strand, within PP_2247at 2563.680 kb on - strand, within PP_2247at 2563.680 kb on - strand, within PP_2247at 2563.680 kb on - strand, within PP_2247at 2563.809 kb on - strandat 2564.370 kb on + strand, within PP_2248at 2564.469 kb on + strand, within PP_2248at 2564.469 kb on + strand, within PP_2248at 2564.469 kb on + strand, within PP_2248at 2564.469 kb on + strand, within PP_2248at 2564.469 kb on + strand, within PP_2248at 2564.470 kb on - strand, within PP_2248at 2564.470 kb on - strand, within PP_2248at 2564.470 kb on - strand, within PP_2248at 2564.470 kb on - strand, within PP_2248at 2564.470 kb on - strand, within PP_2248at 2564.470 kb on - strand, within PP_2248at 2564.478 kb on + strand, within PP_2248at 2564.478 kb on + strand, within PP_2248at 2564.479 kb on - strand, within PP_2248at 2564.479 kb on - strand, within PP_2248at 2564.480 kb on + strand, within PP_2248at 2564.481 kb on - strand, within PP_2248at 2564.481 kb on - strand, within PP_2248

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 10C
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2,562,423 - PP_2246 0.14 +0.5
2,562,423 - PP_2246 0.14 +0.2
2,562,470 + PP_2246 0.18 -0.1
2,562,470 + PP_2246 0.18 -1.0
2,562,470 + PP_2246 0.18 -0.4
2,562,470 + PP_2246 0.18 +0.0
2,562,471 - -2.2
2,562,531 - PP_2246 0.24 -0.1
2,562,531 - PP_2246 0.24 +0.5
2,562,531 - PP_2246 0.24 +0.7
2,562,531 - PP_2246 0.24 +0.1
2,562,531 - PP_2246 0.24 +0.2
2,562,705 + PP_2246 0.39 +0.1
2,562,706 - PP_2246 0.39 -0.2
2,562,706 - PP_2246 0.39 +0.0
2,562,791 + PP_2246 0.46 +0.4
2,562,974 - PP_2246 0.63 +0.1
2,563,014 - PP_2246 0.66 +1.1
2,563,115 - PP_2246 0.75 +0.2
2,563,115 - PP_2246 0.75 +0.1
2,563,118 + PP_2246 0.75 -0.3
2,563,118 + PP_2246 0.75 +0.6
2,563,119 - PP_2246 0.75 -1.8
2,563,679 + PP_2247 0.71 +1.2
2,563,679 + PP_2247 0.71 -1.0
2,563,679 + PP_2247 0.71 +0.1
2,563,680 - PP_2247 0.71 +1.0
2,563,680 - PP_2247 0.71 -0.2
2,563,680 - PP_2247 0.71 +0.9
2,563,809 - +0.1
2,564,370 + PP_2248 0.44 -0.1
2,564,469 + PP_2248 0.53 +0.0
2,564,469 + PP_2248 0.53 +2.3
2,564,469 + PP_2248 0.53 -0.0
2,564,469 + PP_2248 0.53 +1.1
2,564,469 + PP_2248 0.53 -0.7
2,564,470 - PP_2248 0.53 +0.3
2,564,470 - PP_2248 0.53 -0.5
2,564,470 - PP_2248 0.53 +0.2
2,564,470 - PP_2248 0.53 +0.1
2,564,470 - PP_2248 0.53 +0.5
2,564,470 - PP_2248 0.53 -0.1
2,564,478 + PP_2248 0.54 +0.6
2,564,478 + PP_2248 0.54 +0.0
2,564,479 - PP_2248 0.54 -0.3
2,564,479 - PP_2248 0.54 -0.4
2,564,480 + PP_2248 0.54 +0.4
2,564,481 - PP_2248 0.54 +0.4
2,564,481 - PP_2248 0.54 +0.6

Or see this region's nucleotide sequence