Strain Fitness in Pseudomonas putida KT2440 around PP_1718

Experiment: Growth at 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1715 and PP_1716 are separated by 114 nucleotidesPP_1716 and PP_1717 overlap by 4 nucleotidesPP_1717 and PP_1718 are separated by 25 nucleotidesPP_1718 and PP_1719 are separated by 117 nucleotides PP_1715: PP_1715 - conserved protein of unknown function, at 1,915,861 to 1,916,298 _1715 PP_1716: PP_1716 - Transcriptional regulator, Cro/CI family, at 1,916,413 to 1,916,751 _1716 PP_1717: PP_1717 - conserved protein of unknown function, at 1,916,748 to 1,917,116 _1717 PP_1718: PP_1718 - putative diguanylate phosphodiesterase containing EAL domain, at 1,917,142 to 1,918,224 _1718 PP_1719: PP_1719 - Tail-specific protease prc, at 1,918,342 to 1,920,456 _1719 Position (kb) 1917 1918 1919Strain fitness (log2 ratio) -3 -2 -1 0 1at 1916.168 kb on + strand, within PP_1715at 1916.346 kb on + strandat 1916.347 kb on - strandat 1916.352 kb on - strandat 1916.411 kb on + strandat 1916.418 kb on + strandat 1916.418 kb on + strandat 1916.476 kb on + strand, within PP_1716at 1916.476 kb on + strand, within PP_1716at 1916.477 kb on - strand, within PP_1716at 1916.650 kb on + strandat 1916.836 kb on - strand, within PP_1717at 1917.093 kb on + strandat 1917.094 kb on - strandat 1917.094 kb on - strandat 1917.100 kb on - strandat 1917.136 kb on + strandat 1917.136 kb on + strandat 1917.145 kb on + strandat 1917.145 kb on + strandat 1917.145 kb on + strandat 1917.232 kb on + strandat 1917.244 kb on + strandat 1917.524 kb on + strand, within PP_1718at 1917.525 kb on - strand, within PP_1718at 1917.525 kb on - strand, within PP_1718at 1917.633 kb on + strand, within PP_1718at 1917.633 kb on + strand, within PP_1718at 1917.634 kb on - strand, within PP_1718at 1917.634 kb on - strand, within PP_1718at 1917.918 kb on - strand, within PP_1718at 1918.056 kb on + strand, within PP_1718at 1918.056 kb on + strand, within PP_1718at 1918.057 kb on - strand, within PP_1718at 1918.087 kb on - strand, within PP_1718at 1918.123 kb on + strandat 1918.123 kb on + strandat 1918.128 kb on + strandat 1918.128 kb on + strandat 1918.129 kb on - strandat 1918.129 kb on - strandat 1918.170 kb on + strandat 1918.171 kb on - strandat 1918.171 kb on - strandat 1918.242 kb on + strandat 1918.243 kb on - strandat 1918.275 kb on - strandat 1918.275 kb on - strandat 1918.343 kb on + strandat 1918.343 kb on + strandat 1918.343 kb on + strandat 1918.344 kb on - strandat 1918.376 kb on + strandat 1918.376 kb on + strandat 1918.409 kb on + strandat 1918.409 kb on + strandat 1918.431 kb on + strandat 1918.431 kb on + strandat 1918.432 kb on - strandat 1918.637 kb on + strand, within PP_1719at 1918.638 kb on - strand, within PP_1719at 1918.967 kb on + strand, within PP_1719at 1918.967 kb on + strand, within PP_1719at 1918.967 kb on + strand, within PP_1719at 1918.968 kb on - strand, within PP_1719at 1919.045 kb on + strand, within PP_1719at 1919.045 kb on + strand, within PP_1719at 1919.045 kb on + strand, within PP_1719at 1919.046 kb on - strand, within PP_1719

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 10C
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1,916,168 + PP_1715 0.70 -0.6
1,916,346 + +0.4
1,916,347 - -0.3
1,916,352 - +0.6
1,916,411 + +0.9
1,916,418 + -0.6
1,916,418 + +0.3
1,916,476 + PP_1716 0.19 +1.3
1,916,476 + PP_1716 0.19 +0.3
1,916,477 - PP_1716 0.19 +0.7
1,916,650 + +1.5
1,916,836 - PP_1717 0.24 +0.1
1,917,093 + +0.6
1,917,094 - +1.6
1,917,094 - -1.2
1,917,100 - -2.1
1,917,136 + +1.5
1,917,136 + -0.5
1,917,145 + +1.0
1,917,145 + +0.1
1,917,145 + +0.7
1,917,232 + +0.5
1,917,244 + +0.1
1,917,524 + PP_1718 0.35 +0.8
1,917,525 - PP_1718 0.35 +0.3
1,917,525 - PP_1718 0.35 +0.4
1,917,633 + PP_1718 0.45 +1.3
1,917,633 + PP_1718 0.45 +0.1
1,917,634 - PP_1718 0.45 +0.2
1,917,634 - PP_1718 0.45 +0.8
1,917,918 - PP_1718 0.72 -0.4
1,918,056 + PP_1718 0.84 -0.5
1,918,056 + PP_1718 0.84 +0.6
1,918,057 - PP_1718 0.84 +0.1
1,918,087 - PP_1718 0.87 +0.4
1,918,123 + -0.3
1,918,123 + +0.8
1,918,128 + +0.5
1,918,128 + -0.1
1,918,129 - +0.3
1,918,129 - +1.1
1,918,170 + +1.7
1,918,171 - +0.5
1,918,171 - -0.1
1,918,242 + -0.9
1,918,243 - -0.5
1,918,275 - -0.8
1,918,275 - +0.3
1,918,343 + -0.6
1,918,343 + +0.0
1,918,343 + +0.2
1,918,344 - -0.8
1,918,376 + -1.6
1,918,376 + -0.7
1,918,409 + -1.4
1,918,409 + -2.3
1,918,431 + -0.3
1,918,431 + -1.3
1,918,432 - -2.5
1,918,637 + PP_1719 0.14 -0.6
1,918,638 - PP_1719 0.14 -0.2
1,918,967 + PP_1719 0.30 -0.8
1,918,967 + PP_1719 0.30 -0.3
1,918,967 + PP_1719 0.30 -2.4
1,918,968 - PP_1719 0.30 -1.8
1,919,045 + PP_1719 0.33 +0.2
1,919,045 + PP_1719 0.33 -3.5
1,919,045 + PP_1719 0.33 -2.0
1,919,046 - PP_1719 0.33 -1.2

Or see this region's nucleotide sequence