Strain Fitness in Pseudomonas putida KT2440 around PP_1142

Experiment: Growth at 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1141 and PP_1142 are separated by 293 nucleotidesPP_1142 and PP_1143 are separated by 192 nucleotides PP_1141: PP_1141 - branched-chain amino acids ABC transporter - periplasmic leucine binding subunit, at 1,306,502 to 1,307,617 _1141 PP_1142: PP_1142 - conserved protein of unknown function, at 1,307,911 to 1,308,288 _1142 PP_1143: PP_1143 - 3-hydroxyisobutyrate dehydrogenase family protein, at 1,308,481 to 1,309,368 _1143 PP_1144: PP_1144 - conserved membrane protein of unknown function, at 1,309,268 to 1,311,532 _1144 Position (kb) 1307 1308 1309Strain fitness (log2 ratio) -2 -1 0 1at 1306.954 kb on - strand, within PP_1141at 1306.956 kb on + strand, within PP_1141at 1306.956 kb on + strand, within PP_1141at 1306.957 kb on - strand, within PP_1141at 1306.957 kb on - strand, within PP_1141at 1307.100 kb on + strand, within PP_1141at 1307.100 kb on + strand, within PP_1141at 1307.101 kb on - strand, within PP_1141at 1307.101 kb on - strand, within PP_1141at 1307.157 kb on + strand, within PP_1141at 1307.157 kb on + strand, within PP_1141at 1307.158 kb on - strand, within PP_1141at 1307.158 kb on - strand, within PP_1141at 1307.217 kb on + strand, within PP_1141at 1307.217 kb on + strand, within PP_1141at 1307.283 kb on + strand, within PP_1141at 1307.284 kb on - strand, within PP_1141at 1307.284 kb on - strand, within PP_1141at 1307.284 kb on - strand, within PP_1141at 1307.284 kb on - strand, within PP_1141at 1307.404 kb on - strand, within PP_1141at 1307.404 kb on - strand, within PP_1141at 1307.452 kb on + strand, within PP_1141at 1307.453 kb on - strand, within PP_1141at 1307.583 kb on - strandat 1307.618 kb on - strandat 1307.618 kb on - strandat 1307.618 kb on - strandat 1307.646 kb on + strandat 1307.646 kb on + strandat 1307.646 kb on + strandat 1307.647 kb on - strandat 1307.648 kb on + strandat 1307.648 kb on + strandat 1307.667 kb on + strandat 1307.667 kb on + strandat 1307.758 kb on - strandat 1307.758 kb on - strandat 1307.834 kb on - strandat 1307.904 kb on + strandat 1307.905 kb on - strandat 1308.002 kb on - strand, within PP_1142at 1308.296 kb on + strandat 1308.363 kb on + strandat 1308.364 kb on - strandat 1308.364 kb on - strandat 1308.401 kb on + strandat 1308.401 kb on + strandat 1308.494 kb on + strandat 1308.495 kb on - strandat 1308.495 kb on - strandat 1308.677 kb on + strand, within PP_1143at 1308.677 kb on + strand, within PP_1143at 1308.677 kb on + strand, within PP_1143at 1308.975 kb on + strand, within PP_1143at 1308.975 kb on + strand, within PP_1143at 1309.046 kb on + strand, within PP_1143at 1309.047 kb on - strand, within PP_1143at 1309.047 kb on - strand, within PP_1143at 1309.047 kb on - strand, within PP_1143at 1309.199 kb on + strand, within PP_1143at 1309.199 kb on + strand, within PP_1143at 1309.200 kb on - strand, within PP_1143at 1309.200 kb on - strand, within PP_1143

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 10C
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1,306,954 - PP_1141 0.41 +0.1
1,306,956 + PP_1141 0.41 +0.4
1,306,956 + PP_1141 0.41 +0.1
1,306,957 - PP_1141 0.41 -1.4
1,306,957 - PP_1141 0.41 -1.2
1,307,100 + PP_1141 0.54 +0.3
1,307,100 + PP_1141 0.54 +0.7
1,307,101 - PP_1141 0.54 +1.7
1,307,101 - PP_1141 0.54 -0.9
1,307,157 + PP_1141 0.59 +0.7
1,307,157 + PP_1141 0.59 +0.4
1,307,158 - PP_1141 0.59 -0.3
1,307,158 - PP_1141 0.59 +0.4
1,307,217 + PP_1141 0.64 -1.1
1,307,217 + PP_1141 0.64 -0.0
1,307,283 + PP_1141 0.70 +0.5
1,307,284 - PP_1141 0.70 +1.4
1,307,284 - PP_1141 0.70 +0.2
1,307,284 - PP_1141 0.70 -1.0
1,307,284 - PP_1141 0.70 +0.4
1,307,404 - PP_1141 0.81 +0.0
1,307,404 - PP_1141 0.81 -0.1
1,307,452 + PP_1141 0.85 -0.4
1,307,453 - PP_1141 0.85 +0.3
1,307,583 - +0.8
1,307,618 - -0.1
1,307,618 - -2.0
1,307,618 - -0.1
1,307,646 + -0.1
1,307,646 + +0.4
1,307,646 + -0.1
1,307,647 - +0.6
1,307,648 + +0.6
1,307,648 + -0.2
1,307,667 + +0.5
1,307,667 + +1.4
1,307,758 - +0.5
1,307,758 - -0.3
1,307,834 - -0.3
1,307,904 + +0.7
1,307,905 - +0.6
1,308,002 - PP_1142 0.24 +0.8
1,308,296 + -0.5
1,308,363 + +0.2
1,308,364 - +0.0
1,308,364 - -1.2
1,308,401 + +0.2
1,308,401 + +0.5
1,308,494 + +0.1
1,308,495 - -0.3
1,308,495 - -1.2
1,308,677 + PP_1143 0.22 -0.9
1,308,677 + PP_1143 0.22 +0.9
1,308,677 + PP_1143 0.22 +0.7
1,308,975 + PP_1143 0.56 -0.1
1,308,975 + PP_1143 0.56 +0.0
1,309,046 + PP_1143 0.64 -0.5
1,309,047 - PP_1143 0.64 -0.2
1,309,047 - PP_1143 0.64 +1.3
1,309,047 - PP_1143 0.64 -0.6
1,309,199 + PP_1143 0.81 -0.2
1,309,199 + PP_1143 0.81 -1.1
1,309,200 - PP_1143 0.81 -0.2
1,309,200 - PP_1143 0.81 -1.3

Or see this region's nucleotide sequence