Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03890 and PS417_03895 overlap by 4 nucleotides PS417_03895 and PS417_03900 overlap by 4 nucleotides PS417_03900 and PS417_03905 are separated by 199 nucleotides PS417_03905 and PS417_03910 are separated by 35 nucleotides
PS417_03890: PS417_03890 - dephospho-CoA kinase, at 870,827 to 871,450
_03890
PS417_03895: PS417_03895 - methyltransferase, at 871,447 to 872,313
_03895
PS417_03900: PS417_03900 - type II secretion system protein F, at 872,310 to 873,518
_03900
PS417_03905: PS417_03905 - fimbrial protein, at 873,718 to 874,134
_03905
PS417_03910: PS417_03910 - pilus assembly protein, at 874,170 to 875,570
_03910
Position (kb) 872
873
874 Strain fitness (log2 ratio) -1
0
1
2 at 871.473 kb on - strand at 871.843 kb on + strand, within PS417_03895 at 871.844 kb on - strand, within PS417_03895 at 871.844 kb on - strand, within PS417_03895 at 872.052 kb on - strand, within PS417_03895 at 872.083 kb on + strand, within PS417_03895 at 872.132 kb on + strand, within PS417_03895 at 872.344 kb on + strand at 872.344 kb on + strand at 872.449 kb on + strand, within PS417_03900 at 872.450 kb on - strand, within PS417_03900 at 872.450 kb on - strand, within PS417_03900 at 872.580 kb on + strand, within PS417_03900 at 872.580 kb on + strand, within PS417_03900 at 873.010 kb on + strand, within PS417_03900 at 873.011 kb on - strand, within PS417_03900 at 873.039 kb on + strand, within PS417_03900 at 873.131 kb on - strand, within PS417_03900 at 873.131 kb on - strand, within PS417_03900 at 873.281 kb on + strand, within PS417_03900 at 873.553 kb on + strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.558 kb on + strand at 873.559 kb on - strand at 873.648 kb on - strand at 873.663 kb on + strand at 873.701 kb on + strand at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 874.099 kb on + strand at 874.099 kb on + strand at 874.139 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 871,473 - +0.8 871,843 + PS417_03895 0.46 -0.6 871,844 - PS417_03895 0.46 -0.1 871,844 - PS417_03895 0.46 +0.1 872,052 - PS417_03895 0.70 +0.1 872,083 + PS417_03895 0.73 -0.3 872,132 + PS417_03895 0.79 +0.7 872,344 + -0.8 872,344 + -0.4 872,449 + PS417_03900 0.11 +0.8 872,450 - PS417_03900 0.12 +0.5 872,450 - PS417_03900 0.12 +0.4 872,580 + PS417_03900 0.22 +2.4 872,580 + PS417_03900 0.22 +1.7 873,010 + PS417_03900 0.58 +0.9 873,011 - PS417_03900 0.58 +0.5 873,039 + PS417_03900 0.60 -0.6 873,131 - PS417_03900 0.68 +0.6 873,131 - PS417_03900 0.68 +0.9 873,281 + PS417_03900 0.80 +0.0 873,553 + +0.6 873,554 - +0.0 873,554 - +0.7 873,554 - +0.7 873,554 - +0.0 873,554 - -0.9 873,558 + +0.7 873,559 - +0.1 873,648 - +2.1 873,663 + -0.5 873,701 + -1.0 873,806 - PS417_03905 0.21 +1.3 873,806 - PS417_03905 0.21 -1.4 873,806 - PS417_03905 0.21 -0.9 873,806 - PS417_03905 0.21 -1.5 873,806 - PS417_03905 0.21 -0.5 874,099 + -1.3 874,099 + +1.3 874,139 + +0.9
Or see this region's nucleotide sequence