Strain Fitness in Pseudomonas simiae WCS417 around PS417_03500

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03485 and PS417_03490 overlap by 4 nucleotidesPS417_03490 and PS417_03495 are separated by 7 nucleotidesPS417_03495 and PS417_03500 are separated by 10 nucleotidesPS417_03500 and PS417_03505 overlap by 4 nucleotides PS417_03485: PS417_03485 - type III secretion protein, at 800,283 to 801,296 _03485 PS417_03490: PS417_03490 - type III secretion system protein SsaR, at 801,293 to 801,946 _03490 PS417_03495: PS417_03495 - type III secretory protein EscS, at 801,954 to 802,217 _03495 PS417_03500: PS417_03500 - type III secretion system protein, at 802,228 to 803,016 _03500 PS417_03505: PS417_03505 - type III secretion system protein, at 803,013 to 804,110 _03505 Position (kb) 802 803 804Strain fitness (log2 ratio) -2 -1 0 1 2at 801.247 kb on + strandat 801.636 kb on + strand, within PS417_03490at 801.636 kb on + strand, within PS417_03490at 801.637 kb on - strand, within PS417_03490at 801.637 kb on - strand, within PS417_03490at 801.780 kb on - strand, within PS417_03490at 801.780 kb on - strand, within PS417_03490at 801.938 kb on + strandat 802.075 kb on + strand, within PS417_03495at 802.076 kb on - strand, within PS417_03495at 802.076 kb on - strand, within PS417_03495at 802.237 kb on + strandat 802.278 kb on + strandat 802.279 kb on - strandat 802.323 kb on + strand, within PS417_03500at 802.323 kb on + strand, within PS417_03500at 802.323 kb on + strand, within PS417_03500at 802.323 kb on + strand, within PS417_03500at 802.324 kb on - strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.326 kb on - strand, within PS417_03500at 802.326 kb on - strand, within PS417_03500at 802.326 kb on - strand, within PS417_03500at 802.326 kb on - strand, within PS417_03500at 802.636 kb on - strand, within PS417_03500at 802.678 kb on + strand, within PS417_03500at 802.844 kb on - strand, within PS417_03500at 802.918 kb on + strandat 803.385 kb on - strand, within PS417_03505at 803.385 kb on - strand, within PS417_03505at 803.481 kb on + strand, within PS417_03505at 803.481 kb on + strand, within PS417_03505at 803.482 kb on - strand, within PS417_03505at 803.482 kb on - strand, within PS417_03505at 803.482 kb on - strand, within PS417_03505at 803.488 kb on + strand, within PS417_03505at 803.544 kb on + strand, within PS417_03505at 803.544 kb on + strand, within PS417_03505at 803.544 kb on + strand, within PS417_03505at 803.545 kb on - strand, within PS417_03505at 803.545 kb on - strand, within PS417_03505at 803.545 kb on - strand, within PS417_03505at 803.745 kb on + strand, within PS417_03505at 803.842 kb on - strand, within PS417_03505at 803.855 kb on + strand, within PS417_03505at 803.956 kb on + strand, within PS417_03505at 803.956 kb on + strand, within PS417_03505at 803.956 kb on + strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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801,247 + -1.7
801,636 + PS417_03490 0.52 -0.0
801,636 + PS417_03490 0.52 -0.5
801,637 - PS417_03490 0.53 +0.6
801,637 - PS417_03490 0.53 +0.6
801,780 - PS417_03490 0.74 -0.3
801,780 - PS417_03490 0.74 +1.1
801,938 + -0.3
802,075 + PS417_03495 0.46 -1.3
802,076 - PS417_03495 0.46 +0.3
802,076 - PS417_03495 0.46 +0.4
802,237 + -0.6
802,278 + +0.1
802,279 - +0.2
802,323 + PS417_03500 0.12 -0.4
802,323 + PS417_03500 0.12 -0.8
802,323 + PS417_03500 0.12 -0.6
802,323 + PS417_03500 0.12 -1.6
802,324 - PS417_03500 0.12 -0.0
802,325 + PS417_03500 0.12 -1.1
802,325 + PS417_03500 0.12 +0.3
802,325 + PS417_03500 0.12 -0.1
802,325 + PS417_03500 0.12 -1.6
802,325 + PS417_03500 0.12 -2.2
802,325 + PS417_03500 0.12 -1.5
802,326 - PS417_03500 0.12 +0.8
802,326 - PS417_03500 0.12 -0.3
802,326 - PS417_03500 0.12 -1.9
802,326 - PS417_03500 0.12 -0.3
802,636 - PS417_03500 0.52 -1.0
802,678 + PS417_03500 0.57 -0.5
802,844 - PS417_03500 0.78 +2.3
802,918 + +0.1
803,385 - PS417_03505 0.34 +0.2
803,385 - PS417_03505 0.34 +0.5
803,481 + PS417_03505 0.43 -0.4
803,481 + PS417_03505 0.43 +0.7
803,482 - PS417_03505 0.43 +0.6
803,482 - PS417_03505 0.43 +2.7
803,482 - PS417_03505 0.43 -0.4
803,488 + PS417_03505 0.43 +0.7
803,544 + PS417_03505 0.48 +1.0
803,544 + PS417_03505 0.48 -1.3
803,544 + PS417_03505 0.48 -0.2
803,545 - PS417_03505 0.48 -1.4
803,545 - PS417_03505 0.48 +0.1
803,545 - PS417_03505 0.48 -0.2
803,745 + PS417_03505 0.67 +0.2
803,842 - PS417_03505 0.76 -0.0
803,855 + PS417_03505 0.77 -0.7
803,956 + PS417_03505 0.86 +2.2
803,956 + PS417_03505 0.86 +0.9
803,956 + PS417_03505 0.86 +1.1
803,957 - PS417_03505 0.86 +0.2
803,957 - PS417_03505 0.86 -2.3
803,957 - PS417_03505 0.86 +0.9
803,957 - PS417_03505 0.86 +0.2

Or see this region's nucleotide sequence