Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27580 and PS417_27585 are separated by 3 nucleotides PS417_27585 and PS417_27590 are separated by 13 nucleotides PS417_27590 and PS417_27595 are separated by 2 nucleotides
PS417_27580: PS417_27580 - diaminopimelate decarboxylase, at 5,949,150 to 5,950,397
_27580
PS417_27585: PS417_27585 - diaminopimelate epimerase, at 5,950,401 to 5,951,231
_27585
PS417_27590: PS417_27590 - hypothetical protein, at 5,951,245 to 5,951,961
_27590
PS417_27595: PS417_27595 - recombinase XerC, at 5,951,964 to 5,952,863
_27595
Position (kb) 5950
5951
5952 Strain fitness (log2 ratio) -2
-1
0
1 at 5950.395 kb on + strand at 5950.540 kb on + strand, within PS417_27585 at 5950.540 kb on + strand, within PS417_27585 at 5950.821 kb on + strand, within PS417_27585 at 5951.208 kb on + strand at 5951.243 kb on + strand at 5951.244 kb on - strand at 5951.442 kb on + strand, within PS417_27590 at 5951.442 kb on + strand, within PS417_27590 at 5951.442 kb on + strand, within PS417_27590 at 5951.443 kb on - strand, within PS417_27590 at 5951.445 kb on + strand at 5951.863 kb on + strand, within PS417_27590 at 5951.863 kb on + strand, within PS417_27590 at 5951.864 kb on - strand, within PS417_27590 at 5951.864 kb on - strand, within PS417_27590 at 5951.864 kb on - strand, within PS417_27590 at 5951.896 kb on + strand at 5951.896 kb on + strand at 5951.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,950,395 + -0.6 5,950,540 + PS417_27585 0.17 +0.2 5,950,540 + PS417_27585 0.17 +0.2 5,950,821 + PS417_27585 0.51 -2.1 5,951,208 + -2.0 5,951,243 + -2.0 5,951,244 - -0.5 5,951,442 + PS417_27590 0.27 +0.1 5,951,442 + PS417_27590 0.27 -0.9 5,951,442 + PS417_27590 0.27 -0.8 5,951,443 - PS417_27590 0.28 -2.1 5,951,445 + +1.7 5,951,863 + PS417_27590 0.86 -1.3 5,951,863 + PS417_27590 0.86 +1.2 5,951,864 - PS417_27590 0.86 -0.1 5,951,864 - PS417_27590 0.86 -0.9 5,951,864 - PS417_27590 0.86 -0.7 5,951,896 + +0.2 5,951,896 + -0.1 5,951,897 - -0.3
Or see this region's nucleotide sequence