Strain Fitness in Pseudomonas simiae WCS417 around PS417_27340

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
5,898,404	-		PS417_27330	0.71	+1.7
5,898,504	-		PS417_27330	0.80	+4.1
5,898,504	-		PS417_27330	0.80	-1.7
5,898,749	-				+1.0
5,898,749	-				-1.1
5,898,749	-				+0.4
5,898,771	+				-0.8
5,898,772	-				-0.3
5,899,029	-		PS417_27335	0.61	+0.3
5,899,059	+		PS417_27335	0.69	+0.3
5,899,059	+		PS417_27335	0.69	+0.7
5,899,060	-		PS417_27335	0.69	-0.3
5,899,060	-		PS417_27335	0.69	-0.4
5,899,060	-		PS417_27335	0.69	+0.5
5,899,091	-		PS417_27335	0.76	+0.2
5,899,091	-		PS417_27335	0.76	-0.4
5,899,092	+		PS417_27335	0.77	-1.6
5,899,092	+		PS417_27335	0.77	-0.6
5,899,092	+		PS417_27335	0.77	+1.0
5,899,092	+		PS417_27335	0.77	+2.1
5,899,092	+		PS417_27335	0.77	+0.2
5,899,092	+		PS417_27335	0.77	+1.1
5,899,093	-		PS417_27335	0.77	+0.3
5,899,093	-		PS417_27335	0.77	-0.4
5,899,093	-		PS417_27335	0.77	+0.4
5,899,093	-		PS417_27335	0.77	-0.9
5,899,093	-		PS417_27335	0.77	+0.1
5,899,093	-		PS417_27335	0.77	-0.4
5,899,093	-		PS417_27335	0.77	+0.2
5,899,300	+				+0.4
5,899,300	+				-0.3
5,899,301	-				-0.6
5,899,301	-				+1.1
5,899,306	+				+0.2
5,899,307	-				-0.2
5,899,307	-				-0.3
5,899,331	-				+0.4
5,899,487	+		PS417_27340	0.15	-1.4
5,899,488	-		PS417_27340	0.15	-0.6
5,899,643	+		PS417_27340	0.31	-1.9
5,899,644	-		PS417_27340	0.31	-2.3
5,899,706	+		PS417_27340	0.38	-0.5
5,899,707	-		PS417_27340	0.38	-0.6
5,899,908	-		PS417_27340	0.58	-2.2
5,899,974	-		PS417_27340	0.65	-0.9
5,900,192	+		PS417_27340	0.87	-1.6
5,900,208	+		PS417_27340	0.89	-1.3
5,900,295	+				+0.1
5,900,296	-				-1.1
5,900,296	-				-0.3
5,900,467	+				+1.0
5,900,468	-				-1.4
5,900,468	-				-1.1
5,900,468	-				+0.7
5,900,471	+				-0.4
5,900,488	+				-2.5
5,900,529	+				-0.6
5,900,529	+				-0.8
5,900,529	+				+1.5
5,900,529	+				-0.2
5,900,529	+				-1.0
5,900,529	+				-3.4
5,900,669	+				-0.9
5,900,669	+				-0.3
5,900,669	+				+0.2
5,900,669	+				+0.1
5,900,670	-				+0.4
5,900,673	+				+0.4
5,900,730	+				+2.2
5,900,730	+				-2.3
5,900,731	-				+0.1
5,900,767	-		PS417_27345	0.12	+0.3
5,900,787	-		PS417_27345	0.13	-0.4
5,900,833	-		PS417_27345	0.17	-0.1
5,900,886	+		PS417_27345	0.21	-1.4
5,900,886	+		PS417_27345	0.21	+0.7
5,900,886	+		PS417_27345	0.21	+0.8
5,900,886	+		PS417_27345	0.21	+0.9
5,901,177	+		PS417_27345	0.43	-0.8
5,901,177	+		PS417_27345	0.43	-0.9
5,901,177	+		PS417_27345	0.43	-0.4
5,901,177	+		PS417_27345	0.43	+0.9
5,901,178	-		PS417_27345	0.43	-0.4
5,901,178	-		PS417_27345	0.43	-0.3
5,901,224	+		PS417_27345	0.46	-0.2
5,901,274	-		PS417_27345	0.50	-2.3
5,901,274	-		PS417_27345	0.50	-0.3
5,901,297	+		PS417_27345	0.52	-0.6