Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23850 and PS417_23855 overlap by 4 nucleotides PS417_23855 and PS417_23860 are separated by 156 nucleotides PS417_23860 and PS417_23865 overlap by 4 nucleotides
PS417_23850: PS417_23850 - ABC transporter permease, at 5,161,020 to 5,162,057
_23850
PS417_23855: PS417_23855 - ABC transporter substrate-binding protein, at 5,162,054 to 5,162,932
_23855
PS417_23860: PS417_23860 - Rieske (2Fe-2S) protein, at 5,163,089 to 5,163,406
_23860
PS417_23865: PS417_23865 - XRE family transcriptional regulator, at 5,163,403 to 5,164,113
_23865
Position (kb) 5162
5163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5161.307 kb on + strand, within PS417_23850 at 5161.307 kb on + strand, within PS417_23850 at 5161.442 kb on - strand, within PS417_23850 at 5161.442 kb on - strand, within PS417_23850 at 5161.442 kb on - strand, within PS417_23850 at 5161.510 kb on + strand, within PS417_23850 at 5161.514 kb on + strand, within PS417_23850 at 5161.626 kb on - strand, within PS417_23850 at 5161.666 kb on + strand, within PS417_23850 at 5161.666 kb on + strand, within PS417_23850 at 5161.667 kb on - strand, within PS417_23850 at 5161.821 kb on + strand, within PS417_23850 at 5161.822 kb on - strand, within PS417_23850 at 5161.940 kb on + strand, within PS417_23850 at 5162.068 kb on + strand at 5162.068 kb on + strand at 5162.069 kb on - strand at 5162.732 kb on - strand, within PS417_23855 at 5162.843 kb on + strand, within PS417_23855 at 5162.932 kb on + strand at 5162.933 kb on - strand at 5162.933 kb on - strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.988 kb on - strand at 5162.988 kb on - strand at 5163.006 kb on + strand at 5163.078 kb on + strand at 5163.079 kb on - strand at 5163.191 kb on + strand, within PS417_23860 at 5163.191 kb on + strand, within PS417_23860 at 5163.192 kb on - strand, within PS417_23860 at 5163.197 kb on + strand, within PS417_23860 at 5163.197 kb on + strand, within PS417_23860 at 5163.197 kb on + strand, within PS417_23860 at 5163.197 kb on + strand, within PS417_23860 at 5163.197 kb on + strand, within PS417_23860 at 5163.197 kb on + strand at 5163.198 kb on - strand, within PS417_23860 at 5163.198 kb on - strand, within PS417_23860 at 5163.198 kb on - strand, within PS417_23860 at 5163.355 kb on + strand, within PS417_23860 at 5163.415 kb on + strand at 5163.415 kb on + strand at 5163.415 kb on + strand at 5163.416 kb on - strand at 5163.416 kb on - strand at 5163.416 kb on - strand at 5163.416 kb on - strand at 5163.438 kb on - strand at 5163.438 kb on - strand at 5163.468 kb on - strand at 5163.519 kb on - strand, within PS417_23865 at 5163.519 kb on - strand, within PS417_23865 at 5163.578 kb on + strand, within PS417_23865 at 5163.578 kb on + strand, within PS417_23865 at 5163.578 kb on + strand, within PS417_23865 at 5163.578 kb on + strand, within PS417_23865 at 5163.579 kb on - strand, within PS417_23865 at 5163.579 kb on - strand, within PS417_23865 at 5163.701 kb on - strand, within PS417_23865 at 5163.824 kb on - strand, within PS417_23865
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,161,307 + PS417_23850 0.28 -1.4 5,161,307 + PS417_23850 0.28 +0.2 5,161,442 - PS417_23850 0.41 +1.1 5,161,442 - PS417_23850 0.41 -1.5 5,161,442 - PS417_23850 0.41 -0.1 5,161,510 + PS417_23850 0.47 +0.1 5,161,514 + PS417_23850 0.48 +0.1 5,161,626 - PS417_23850 0.58 -0.5 5,161,666 + PS417_23850 0.62 +0.0 5,161,666 + PS417_23850 0.62 -0.4 5,161,667 - PS417_23850 0.62 -0.3 5,161,821 + PS417_23850 0.77 +0.0 5,161,822 - PS417_23850 0.77 +0.1 5,161,940 + PS417_23850 0.89 +2.1 5,162,068 + +3.7 5,162,068 + +0.4 5,162,069 - +0.0 5,162,732 - PS417_23855 0.77 +2.3 5,162,843 + PS417_23855 0.90 +0.4 5,162,932 + -0.5 5,162,933 - +1.1 5,162,933 - -3.4 5,162,987 + +0.4 5,162,987 + -1.1 5,162,987 + +0.2 5,162,987 + +0.5 5,162,987 + -0.6 5,162,987 + -2.3 5,162,987 + +0.7 5,162,987 + +0.0 5,162,988 - +0.9 5,162,988 - +0.4 5,163,006 + +0.2 5,163,078 + -0.4 5,163,079 - -1.3 5,163,191 + PS417_23860 0.32 +0.1 5,163,191 + PS417_23860 0.32 -0.1 5,163,192 - PS417_23860 0.32 -0.2 5,163,197 + PS417_23860 0.34 -0.4 5,163,197 + PS417_23860 0.34 +0.7 5,163,197 + PS417_23860 0.34 +0.2 5,163,197 + PS417_23860 0.34 +0.1 5,163,197 + PS417_23860 0.34 +1.0 5,163,197 + -0.3 5,163,198 - PS417_23860 0.34 +1.7 5,163,198 - PS417_23860 0.34 -2.8 5,163,198 - PS417_23860 0.34 +0.9 5,163,355 + PS417_23860 0.84 -1.3 5,163,415 + +1.7 5,163,415 + -0.3 5,163,415 + -0.7 5,163,416 - +0.1 5,163,416 - -1.6 5,163,416 - -0.5 5,163,416 - +0.7 5,163,438 - -1.7 5,163,438 - -0.4 5,163,468 - +0.5 5,163,519 - PS417_23865 0.16 +0.1 5,163,519 - PS417_23865 0.16 -0.8 5,163,578 + PS417_23865 0.25 -0.1 5,163,578 + PS417_23865 0.25 -0.9 5,163,578 + PS417_23865 0.25 +0.4 5,163,578 + PS417_23865 0.25 +0.9 5,163,579 - PS417_23865 0.25 -0.8 5,163,579 - PS417_23865 0.25 -1.4 5,163,701 - PS417_23865 0.42 -0.9 5,163,824 - PS417_23865 0.59 -0.7
Or see this region's nucleotide sequence