Strain Fitness in Pseudomonas simiae WCS417 around PS417_20010

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
4,343,345	+		PS417_19995	0.86	-0.7
4,343,374	+		PS417_19995	0.88	-0.3
4,343,374	+		PS417_19995	0.88	-0.1
4,343,375	-		PS417_19995	0.88	+0.8
4,343,410	-				+0.3
4,343,463	+				-1.6
4,343,472	-				-0.4
4,343,514	+				-0.1
4,343,514	+				-1.7
4,343,700	+		PS417_20000	0.20	-0.5
4,343,700	+		PS417_20000	0.20	+0.9
4,343,700	+		PS417_20000	0.20	-0.6
4,343,700	+		PS417_20000	0.20	+1.1
4,343,701	-		PS417_20000	0.20	-0.4
4,343,701	-		PS417_20000	0.20	+1.0
4,343,701	-		PS417_20000	0.20	-0.3
4,343,701	-		PS417_20000	0.20	+2.2
4,343,707	-		PS417_20000	0.21	-0.8
4,343,747	+		PS417_20000	0.28	-1.4
4,343,748	-		PS417_20000	0.28	+0.9
4,343,818	-		PS417_20000	0.41	-1.0
4,343,826	+				+0.0
4,343,827	-		PS417_20000	0.43	-0.9
4,343,827	-		PS417_20000	0.43	-0.2
4,343,827	-		PS417_20000	0.43	+4.2
4,343,916	+		PS417_20000	0.59	-0.5
4,343,926	-		PS417_20000	0.61	-0.5
4,344,145	+				-1.9
4,344,145	+				-0.1
4,344,145	+				+0.0
4,344,145	+				-0.3
4,344,145	+				-0.4
4,344,146	-				-0.5
4,344,146	-				+0.4
4,344,146	-				+1.7
4,344,146	-				-0.1
4,344,146	-				-1.7
4,344,146	-				-0.3
4,344,146	-				-0.5
4,344,146	-				+0.3
4,344,146	-				-0.9
4,344,357	-				-2.1
4,344,420	+				+0.1
4,344,421	-				+1.2
4,344,439	-		PS417_20010	0.11	-1.4
4,344,564	-		PS417_20010	0.21	+0.3
4,344,606	+		PS417_20010	0.25	-0.4
4,344,606	+		PS417_20010	0.25	+0.7
4,344,607	-		PS417_20010	0.25	+0.4
4,344,669	+		PS417_20010	0.30	+0.6
4,344,669	+		PS417_20010	0.30	-0.2
4,344,669	+		PS417_20010	0.30	+0.6
4,344,670	-		PS417_20010	0.30	+0.1
4,344,726	+		PS417_20010	0.35	-0.3
4,344,727	-		PS417_20010	0.35	+2.5
4,344,727	-		PS417_20010	0.35	+3.9
4,345,292	-		PS417_20010	0.81	-0.6
4,345,479	-				-2.1
4,345,522	-				+0.3
4,345,541	-				-1.2
4,345,542	+				-0.5
4,345,552	+				+0.1
4,345,985	+				+0.0
4,345,986	-				-1.6
4,345,986	-				+0.4
4,345,986	-				-1.5
4,345,988	-				+0.6
4,346,127	+		PS417_20020	0.15	-0.4
4,346,128	-		PS417_20020	0.15	-0.1
4,346,128	-		PS417_20020	0.15	+1.0
4,346,128	-		PS417_20020	0.15	-1.4
4,346,274	+		PS417_20020	0.35	-0.3
4,346,274	+		PS417_20020	0.35	+0.4
4,346,274	+		PS417_20020	0.35	-0.5
4,346,274	+		PS417_20020	0.35	-0.1
4,346,275	-		PS417_20020	0.35	-0.2
4,346,275	-		PS417_20020	0.35	-0.1
4,346,275	-		PS417_20020	0.35	-0.5
4,346,275	-		PS417_20020	0.35	-1.5
4,346,275	-		PS417_20020	0.35	-2.2
4,346,275	-		PS417_20020	0.35	+0.1
4,346,278	+		PS417_20020	0.36	-0.0
4,346,278	+		PS417_20020	0.36	-0.2
4,346,279	-		PS417_20020	0.36	-0.7
4,346,289	-		PS417_20020	0.37	-1.5