Strain Fitness in Pseudomonas simiae WCS417 around PS417_09880

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
2,137,685	+		PS417_09870	0.45	-2.9
2,137,709	+		PS417_09870	0.48	-3.6
2,137,902	+		PS417_09870	0.69	-1.8
2,137,903	-		PS417_09870	0.69	+0.4
2,137,945	+		PS417_09870	0.73	-0.4
2,137,946	-		PS417_09870	0.73	-1.5
2,138,069	+		PS417_09870	0.87	-0.5
2,138,146	-				-0.5
2,138,206	+		PS417_09875	0.23	-1.1
2,138,227	+		PS417_09875	0.27	+0.7
2,138,227	+		PS417_09875	0.27	-0.5
2,138,228	-		PS417_09875	0.27	+0.3
2,138,228	-		PS417_09875	0.27	-2.1
2,138,244	+		PS417_09875	0.30	-0.1
2,138,244	+		PS417_09875	0.30	-1.2
2,138,244	+		PS417_09875	0.30	+0.1
2,138,244	+				+0.9
2,138,288	-		PS417_09875	0.38	+0.7
2,138,445	+		PS417_09875	0.68	-1.2
2,138,446	-		PS417_09875	0.68	+0.6
2,138,446	-		PS417_09875	0.68	-0.3
2,138,446	-		PS417_09875	0.68	-1.8
2,138,446	-		PS417_09875	0.68	-0.2
2,138,451	+		PS417_09875	0.69	+0.3
2,138,542	-		PS417_09875	0.86	+0.8
2,138,583	+				-0.6
2,138,583	+				+0.2
2,138,584	-				+1.2
2,138,584	-				+0.4
2,138,584	-				-2.1
2,138,587	+				+0.6
2,138,588	-				-0.9
2,138,588	-				+0.7
2,138,588	-				+0.2
2,138,588	-				+1.7
2,138,588	-				-0.1
2,138,641	-				+0.3
2,138,643	+				+0.1
2,138,708	-		PS417_09880	0.11	+0.9
2,138,751	+		PS417_09880	0.30	+1.7
2,138,752	-		PS417_09880	0.30	+0.7
2,138,752	-		PS417_09880	0.30	+1.0
2,138,797	-		PS417_09880	0.50	-0.0
2,138,797	-				+0.1
2,138,959	+				-0.3
2,138,960	-				+0.8
2,138,978	+				-0.2
2,139,009	-				+0.3
2,139,015	-				+0.5
2,139,067	+				-0.7
2,139,068	-				-0.3
2,139,110	+		PS417_09885	0.17	+0.7
2,139,157	+		PS417_09885	0.25	-0.7
2,139,157	+		PS417_09885	0.25	+0.8
2,139,157	+		PS417_09885	0.25	-0.7
2,139,158	-		PS417_09885	0.26	+0.7
2,139,244	+		PS417_09885	0.41	+0.5
2,139,261	-		PS417_09885	0.44	-0.5
2,139,317	-		PS417_09885	0.54	+0.4
2,139,383	+		PS417_09885	0.66	-0.3
2,139,546	-				+0.6
2,139,546	-				-0.1
2,139,546	-				+0.0
2,139,546	-				-0.7
2,139,570	+				-0.4
2,139,570	+				-1.8
2,139,570	+				+0.3
2,139,605	-				+3.1
2,139,609	+				+0.5
2,139,609	+				-0.2
2,139,609	+				-0.3
2,139,712	+				-0.7
2,139,712	+				+1.1
2,139,782	+				-0.3
2,139,782	+				-0.2
2,139,783	-				+0.6
2,139,783	-				+0.8
2,139,783	-				-0.9
2,139,834	+		PS417_09890	0.23	-0.6
2,139,834	+		PS417_09890	0.23	-0.7
2,139,835	-		PS417_09890	0.23	+0.4
2,139,835	-		PS417_09890	0.23	+0.5
2,139,835	-		PS417_09890	0.23	-0.6
2,139,835	-		PS417_09890	0.23	-0.2
2,139,838	+		PS417_09890	0.24	-0.8
2,139,868	+		PS417_09890	0.37	-0.3
2,139,911	+		PS417_09890	0.56	-0.3
2,139,911	+		PS417_09890	0.56	-0.7
2,139,912	-		PS417_09890	0.56	-0.0
2,139,912	-		PS417_09890	0.56	+0.2
2,139,912	-		PS417_09890	0.56	-1.5