Strain Fitness in Pseudomonas simiae WCS417 around PS417_08965

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,950,088	+		PS417_08955	0.64	+0.0
1,950,089	-		PS417_08955	0.64	-1.3
1,950,089	-		PS417_08955	0.64	-0.2
1,950,201	+		PS417_08955	0.77	+1.4
1,950,201	+				-0.6
1,950,202	-		PS417_08955	0.77	-0.5
1,950,202	-		PS417_08955	0.77	-0.7
1,950,202	-		PS417_08955	0.77	+3.0
1,950,224	-		PS417_08955	0.80	+0.2
1,950,281	-		PS417_08955	0.87	-1.8
1,950,281	-		PS417_08955	0.87	+0.4
1,950,281	-		PS417_08955	0.87	-0.6
1,950,437	+				+1.5
1,950,619	+		PS417_08960	0.38	+0.5
1,950,619	+		PS417_08960	0.38	+0.8
1,950,619	+		PS417_08960	0.38	+0.6
1,950,619	+				+0.3
1,950,620	-		PS417_08960	0.38	+4.0
1,950,661	-		PS417_08960	0.48	-0.1
1,950,661	-		PS417_08960	0.48	+0.2
1,950,661	-		PS417_08960	0.48	+0.4
1,950,661	-		PS417_08960	0.48	-1.1
1,950,700	+		PS417_08960	0.57	-2.5
1,950,749	-		PS417_08960	0.69	-1.3
1,950,749	-		PS417_08960	0.69	-3.0
1,950,749	-		PS417_08960	0.69	+0.4
1,950,824	+		PS417_08960	0.87	-1.1
1,950,881	+				+2.3
1,950,882	-				-0.2
1,950,918	+				+0.1
1,950,918	+				-0.3
1,950,919	-				+0.4
1,950,919	-				+2.2
1,950,920	+				-1.5
1,950,920	+				+0.3
1,950,920	+				+0.7
1,951,016	-				+1.0
1,951,094	+				-2.0
1,951,254	-		PS417_08965	0.23	-0.1
1,951,280	+		PS417_08965	0.26	+0.2
1,951,280	+		PS417_08965	0.26	-0.0
1,951,281	-		PS417_08965	0.26	+0.1
1,951,286	+		PS417_08965	0.26	+0.1
1,951,538	+		PS417_08965	0.51	+1.2
1,951,539	-		PS417_08965	0.51	+0.1
1,951,539	-		PS417_08965	0.51	-0.0
1,951,539	-		PS417_08965	0.51	-0.3
1,951,616	+		PS417_08965	0.58	+0.7
1,951,617	-		PS417_08965	0.58	+0.2
1,951,772	+		PS417_08965	0.74	-1.0
1,951,773	-		PS417_08965	0.74	+0.9
1,951,877	-		PS417_08965	0.84	+0.3
1,952,058	+				+0.7
1,952,142	+				+0.1
1,952,143	-				-2.2
1,952,307	+		PS417_08970	0.10	-0.1
1,952,307	+		PS417_08970	0.10	-2.5
1,952,440	+		PS417_08970	0.19	+0.5
1,952,440	+		PS417_08970	0.19	+0.8
1,952,456	+				-1.3
1,952,457	-		PS417_08970	0.20	+1.9
1,952,477	+		PS417_08970	0.21	-0.4
1,952,478	-		PS417_08970	0.21	-0.3
1,952,509	+		PS417_08970	0.23	-0.3
1,952,509	+		PS417_08970	0.23	-0.2
1,952,688	-		PS417_08970	0.34	+0.3
1,952,775	+		PS417_08970	0.39	-0.3