Strain Fitness in Pseudomonas simiae WCS417 around PS417_08935

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,944,742	+		PS417_08925	0.42	-0.2
1,944,816	-		PS417_08925	0.52	-0.9
1,944,816	-		PS417_08925	0.52	+0.1
1,944,851	+		PS417_08925	0.57	+0.1
1,944,995	+		PS417_08925	0.76	+0.4
1,944,995	+		PS417_08925	0.76	-3.2
1,944,996	-		PS417_08925	0.76	+1.9
1,945,121	+				+0.3
1,945,121	+				-0.4
1,945,122	-				-2.3
1,945,122	-				+0.1
1,945,169	+				-0.7
1,945,173	+				-0.3
1,945,174	-				-0.1
1,945,217	+				-3.5
1,945,245	+				+2.3
1,945,245	+				+0.2
1,945,245	+				+1.7
1,945,373	-		PS417_08930	0.44	-0.2
1,945,373	-		PS417_08930	0.44	-0.6
1,945,499	+				+0.8
1,945,499	+				-0.9
1,945,499	+				-0.2
1,945,500	-				-0.4
1,945,500	-				+0.2
1,945,537	-				+0.3
1,945,537	-				-1.3
1,945,540	+				-1.3
1,945,540	+				+0.3
1,945,572	-				+0.1
1,945,588	+				-0.4
1,945,589	-				+0.7
1,945,592	+				-2.9
1,945,592	+				+1.2
1,945,592	+				+0.7
1,945,592	+				+1.1
1,945,593	-				-1.1
1,945,593	-				-1.3
1,945,593	-				-1.4
1,945,593	-				-3.1
1,945,593	-				-0.6
1,945,594	+				+0.6
1,945,594	+				+0.5
1,945,594	+				-1.3
1,945,595	-				-1.1
1,945,595	-				-0.9
1,945,597	-				-3.2
1,945,597	-				-0.0
1,945,652	+				+0.5
1,945,655	+				+0.3
1,945,775	+		PS417_08935	0.22	+0.2
1,945,775	+		PS417_08935	0.22	-0.7
1,945,792	-		PS417_08935	0.25	-0.4
1,945,892	-		PS417_08935	0.46	+1.6
1,945,892	-		PS417_08935	0.46	-2.0
1,945,938	+		PS417_08935	0.56	-0.2
1,945,938	+		PS417_08935	0.56	+1.2
1,945,938	+		PS417_08935	0.56	-1.1
1,945,939	-				+0.4
1,946,031	+		PS417_08935	0.75	-0.6
1,946,078	+		PS417_08935	0.85	+2.3
1,946,078	+		PS417_08935	0.85	-0.9
1,946,079	-		PS417_08935	0.86	-0.4
1,946,079	-		PS417_08935	0.86	-1.3
1,946,196	-		PS417_08940	0.11	-0.9
1,946,299	+		PS417_08940	0.34	-1.1
1,946,299	+		PS417_08940	0.34	+1.2
1,946,300	-		PS417_08940	0.34	-2.2
1,946,300	-		PS417_08940	0.34	-1.1
1,946,300	-		PS417_08940	0.34	+0.2
1,946,463	-				+1.7
1,946,768	-				+0.0
1,946,831	+				-1.2
1,947,105	-		PS417_08945	0.22	+1.5