Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00865 and PS417_00870 overlap by 4 nucleotides PS417_00870 and PS417_00875 are separated by 527 nucleotides PS417_00875 and PS417_00880 are separated by 778 nucleotides
PS417_00865: PS417_00865 - hypothetical protein, at 194,666 to 194,938
_00865
PS417_00870: PS417_00870 - hypothetical protein, at 194,935 to 195,219
_00870
PS417_00875: PS417_00875 - hypothetical protein, at 195,747 to 196,052
_00875
PS417_00880: PS417_00880 - hypothetical protein, at 196,831 to 197,124
_00880
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 195.121 kb on + strand, within PS417_00870 at 195.121 kb on + strand, within PS417_00870 at 195.122 kb on - strand, within PS417_00870 at 195.172 kb on - strand, within PS417_00870 at 195.272 kb on - strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.310 kb on - strand at 195.310 kb on - strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.375 kb on - strand at 195.375 kb on - strand at 195.375 kb on - strand at 195.429 kb on + strand at 195.430 kb on - strand at 195.430 kb on - strand at 195.572 kb on + strand at 195.573 kb on - strand at 195.702 kb on - strand at 195.708 kb on - strand at 196.157 kb on + strand at 196.158 kb on - strand at 196.200 kb on + strand at 196.308 kb on - strand at 196.337 kb on + strand at 196.337 kb on + strand at 196.396 kb on + strand at 196.397 kb on - strand at 196.397 kb on - strand at 196.397 kb on - strand at 196.533 kb on + strand at 196.632 kb on + strand at 196.677 kb on + strand at 196.678 kb on - strand at 196.678 kb on - strand at 196.680 kb on + strand at 196.681 kb on - strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.727 kb on - strand at 196.727 kb on - strand at 196.731 kb on - strand at 196.782 kb on - strand at 196.789 kb on + strand at 196.796 kb on + strand at 196.797 kb on - strand at 196.797 kb on - strand at 196.816 kb on - strand at 196.883 kb on + strand, within PS417_00880 at 196.883 kb on + strand, within PS417_00880 at 196.935 kb on - strand, within PS417_00880 at 196.975 kb on + strand, within PS417_00880
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 195,121 + PS417_00870 0.65 +0.4 195,121 + PS417_00870 0.65 -0.3 195,122 - PS417_00870 0.66 -1.3 195,172 - PS417_00870 0.83 -2.3 195,272 - -0.2 195,309 + +0.8 195,309 + -0.0 195,309 + -0.8 195,309 + -0.4 195,310 - -0.4 195,310 - -0.0 195,374 + -0.3 195,374 + -3.6 195,374 + -1.3 195,374 + -1.5 195,374 + -2.0 195,374 + +0.7 195,374 + +0.2 195,374 + +1.7 195,374 + +0.0 195,375 - +1.2 195,375 - +0.4 195,375 - +0.1 195,429 + -0.4 195,430 - +0.7 195,430 - -1.3 195,572 + +0.6 195,573 - -0.6 195,702 - -3.6 195,708 - -1.9 196,157 + -0.6 196,158 - -2.6 196,200 + +0.7 196,308 - +0.2 196,337 + -2.5 196,337 + -3.2 196,396 + +0.7 196,397 - -2.5 196,397 - -0.6 196,397 - +0.4 196,533 + +0.1 196,632 + +0.1 196,677 + -0.7 196,678 - -0.6 196,678 - +0.5 196,680 + -0.1 196,681 - -0.3 196,726 + +0.2 196,726 + +0.2 196,726 + +1.7 196,726 + +0.2 196,727 - -0.0 196,727 - -0.2 196,731 - +0.3 196,782 - +0.4 196,789 + +2.9 196,796 + -2.0 196,797 - -0.0 196,797 - -0.9 196,816 - +0.0 196,883 + PS417_00880 0.18 +0.0 196,883 + PS417_00880 0.18 -1.5 196,935 - PS417_00880 0.35 -1.0 196,975 + PS417_00880 0.49 +0.6
Or see this region's nucleotide sequence