Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00745 and PS417_00750 are separated by 2 nucleotides PS417_00750 and PS417_00755 are separated by 2 nucleotides PS417_00755 and PS417_00760 are separated by 367 nucleotides
PS417_00745: PS417_00745 - outer membrane N-deacetylase, at 157,282 to 159,279
_00745
PS417_00750: PS417_00750 - N-glycosyltransferase, at 159,282 to 160,622
_00750
PS417_00755: PS417_00755 - biofilm PGA synthesis protein PgaD, at 160,625 to 161,107
_00755
PS417_00760: PS417_00760 - ShlB family hemolysin secretion/activation protein, at 161,475 to 163,196
_00760
Position (kb) 159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 158.377 kb on + strand, within PS417_00745 at 158.377 kb on + strand, within PS417_00745 at 158.377 kb on + strand, within PS417_00745 at 158.377 kb on + strand, within PS417_00745 at 158.378 kb on - strand, within PS417_00745 at 158.464 kb on + strand, within PS417_00745 at 158.464 kb on + strand, within PS417_00745 at 158.566 kb on + strand, within PS417_00745 at 158.566 kb on + strand, within PS417_00745 at 158.566 kb on + strand, within PS417_00745 at 158.566 kb on + strand, within PS417_00745 at 158.621 kb on - strand, within PS417_00745 at 158.663 kb on - strand, within PS417_00745 at 158.962 kb on + strand, within PS417_00745 at 158.963 kb on - strand, within PS417_00745 at 159.011 kb on - strand, within PS417_00745 at 159.087 kb on - strand at 159.432 kb on + strand, within PS417_00750 at 159.433 kb on - strand, within PS417_00750 at 159.433 kb on - strand, within PS417_00750 at 159.531 kb on + strand, within PS417_00750 at 159.532 kb on - strand, within PS417_00750 at 159.753 kb on + strand, within PS417_00750 at 159.754 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.996 kb on - strand, within PS417_00750 at 160.095 kb on + strand, within PS417_00750 at 160.096 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.309 kb on - strand, within PS417_00750 at 160.651 kb on + strand at 160.651 kb on + strand at 160.651 kb on + strand at 160.652 kb on - strand at 160.652 kb on - strand at 160.652 kb on - strand at 160.805 kb on + strand, within PS417_00755 at 161.106 kb on - strand at 161.157 kb on + strand at 161.221 kb on + strand at 161.222 kb on - strand at 161.261 kb on - strand at 161.344 kb on - strand at 161.344 kb on - strand at 161.434 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 158,377 + PS417_00745 0.55 +0.5 158,377 + PS417_00745 0.55 -0.1 158,377 + PS417_00745 0.55 -0.4 158,377 + PS417_00745 0.55 +2.7 158,378 - PS417_00745 0.55 -0.4 158,464 + PS417_00745 0.59 +1.9 158,464 + PS417_00745 0.59 +1.0 158,566 + PS417_00745 0.64 -3.2 158,566 + PS417_00745 0.64 -0.7 158,566 + PS417_00745 0.64 +0.5 158,566 + PS417_00745 0.64 +0.1 158,621 - PS417_00745 0.67 +0.7 158,663 - PS417_00745 0.69 +1.2 158,962 + PS417_00745 0.84 +1.7 158,963 - PS417_00745 0.84 +0.4 159,011 - PS417_00745 0.87 +0.2 159,087 - +0.1 159,432 + PS417_00750 0.11 -1.1 159,433 - PS417_00750 0.11 -2.4 159,433 - PS417_00750 0.11 -0.1 159,531 + PS417_00750 0.19 -0.1 159,532 - PS417_00750 0.19 +2.0 159,753 + PS417_00750 0.35 -0.1 159,754 - PS417_00750 0.35 +1.4 159,805 - PS417_00750 0.39 -1.6 159,805 - PS417_00750 0.39 -1.1 159,805 - PS417_00750 0.39 -0.0 159,805 - PS417_00750 0.39 +0.5 159,996 - PS417_00750 0.53 +0.8 160,095 + PS417_00750 0.61 +0.1 160,096 - PS417_00750 0.61 -1.7 160,284 - PS417_00750 0.75 +1.3 160,284 - PS417_00750 0.75 +0.3 160,284 - PS417_00750 0.75 +1.3 160,309 - PS417_00750 0.77 -1.6 160,651 + -0.6 160,651 + +0.2 160,651 + +0.3 160,652 - +0.1 160,652 - -0.6 160,652 - -0.7 160,805 + PS417_00755 0.37 -3.4 161,106 - -0.8 161,157 + -0.8 161,221 + +0.7 161,222 - -0.2 161,261 - -0.3 161,344 - +0.8 161,344 - -0.5 161,434 + +0.9
Or see this region's nucleotide sequence