Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00480 and PS417_00485 overlap by 4 nucleotides PS417_00485 and PS417_00490 are separated by 1 nucleotides PS417_00490 and PS417_00495 overlap by 4 nucleotides
PS417_00480: PS417_00480 - hypothetical protein, at 95,439 to 96,050
_00480
PS417_00485: PS417_00485 - ABC transporter permease, at 96,047 to 96,985
_00485
PS417_00490: PS417_00490 - iron ABC transporter ATP-binding protein, at 96,987 to 97,790
_00490
PS417_00495: PS417_00495 - ABC transporter permease, at 97,787 to 98,935
_00495
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.018 kb on + strand at 96.019 kb on - strand at 96.030 kb on + strand at 96.763 kb on + strand, within PS417_00485 at 96.867 kb on + strand, within PS417_00485 at 96.990 kb on + strand at 96.991 kb on - strand at 96.991 kb on - strand at 96.991 kb on - strand at 96.999 kb on + strand at 97.150 kb on + strand, within PS417_00490 at 97.151 kb on - strand, within PS417_00490 at 97.354 kb on + strand, within PS417_00490 at 97.355 kb on - strand, within PS417_00490 at 97.623 kb on - strand, within PS417_00490 at 97.684 kb on + strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.779 kb on + strand at 97.780 kb on - strand at 98.045 kb on + strand, within PS417_00495 at 98.142 kb on - strand, within PS417_00495 at 98.397 kb on - strand, within PS417_00495 at 98.766 kb on - strand, within PS417_00495
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 96,018 + +1.0 96,019 - -0.2 96,030 + +1.3 96,763 + PS417_00485 0.76 +0.7 96,867 + PS417_00485 0.87 +0.4 96,990 + +1.0 96,991 - +0.3 96,991 - -0.1 96,991 - +0.4 96,999 + -0.3 97,150 + PS417_00490 0.20 -1.9 97,151 - PS417_00490 0.20 +0.8 97,354 + PS417_00490 0.46 +0.5 97,355 - PS417_00490 0.46 +0.6 97,623 - PS417_00490 0.79 +1.2 97,684 + PS417_00490 0.87 -0.3 97,685 - PS417_00490 0.87 +1.8 97,685 - PS417_00490 0.87 +0.0 97,685 - PS417_00490 0.87 +1.1 97,685 - PS417_00490 0.87 +1.8 97,779 + -0.8 97,780 - -0.2 98,045 + PS417_00495 0.22 -0.0 98,142 - PS417_00495 0.31 +0.1 98,397 - PS417_00495 0.53 +0.9 98,766 - PS417_00495 0.85 -2.7
Or see this region's nucleotide sequence