Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03690 and PS417_03695 are separated by 14 nucleotides PS417_03695 and PS417_03700 are separated by 125 nucleotides
PS417_03690: PS417_03690 - NAD-dependent dehydratase, at 834,433 to 835,332
_03690
PS417_03695: PS417_03695 - ferrochelatase, at 835,347 to 836,372
_03695
PS417_03700: PS417_03700 - TonB-dependent receptor, at 836,498 to 838,594
_03700
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2 at 834.385 kb on - strand at 834.386 kb on + strand at 834.392 kb on - strand at 834.416 kb on + strand at 834.567 kb on - strand, within PS417_03690 at 835.025 kb on + strand, within PS417_03690 at 835.026 kb on - strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.090 kb on + strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.092 kb on + strand, within PS417_03690 at 835.092 kb on + strand, within PS417_03690 at 835.093 kb on - strand, within PS417_03690 at 835.093 kb on - strand, within PS417_03690 at 835.330 kb on + strand at 835.336 kb on + strand at 835.336 kb on + strand at 835.336 kb on + strand at 835.337 kb on - strand at 836.370 kb on + strand at 836.370 kb on + strand at 836.371 kb on - strand at 836.506 kb on + strand at 836.577 kb on + strand at 836.577 kb on + strand at 836.577 kb on + strand at 836.581 kb on - strand at 836.640 kb on + strand at 836.640 kb on + strand at 836.640 kb on + strand at 836.719 kb on - strand, within PS417_03700 at 836.719 kb on - strand, within PS417_03700 at 836.868 kb on + strand, within PS417_03700 at 836.869 kb on - strand, within PS417_03700 at 836.869 kb on - strand, within PS417_03700 at 836.903 kb on + strand, within PS417_03700 at 836.903 kb on + strand, within PS417_03700 at 836.904 kb on - strand, within PS417_03700 at 836.904 kb on - strand, within PS417_03700 at 836.991 kb on - strand, within PS417_03700
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 834,385 - -0.8 834,386 + -0.5 834,392 - -0.1 834,416 + +0.5 834,567 - PS417_03690 0.15 +2.2 835,025 + PS417_03690 0.66 -1.9 835,026 - PS417_03690 0.66 -2.4 835,029 + PS417_03690 0.66 +0.3 835,029 + PS417_03690 0.66 -0.2 835,029 + PS417_03690 0.66 +0.8 835,029 + PS417_03690 0.66 +1.0 835,029 + PS417_03690 0.66 -0.2 835,029 + PS417_03690 0.66 +1.7 835,029 + PS417_03690 0.66 -0.6 835,030 - PS417_03690 0.66 -0.2 835,030 - PS417_03690 0.66 -0.6 835,030 - PS417_03690 0.66 +0.9 835,030 - PS417_03690 0.66 -1.2 835,030 - PS417_03690 0.66 +0.2 835,030 - PS417_03690 0.66 -1.6 835,030 - PS417_03690 0.66 -1.0 835,030 - PS417_03690 0.66 -0.4 835,030 - PS417_03690 0.66 +0.2 835,030 - PS417_03690 0.66 +0.4 835,090 + PS417_03690 0.73 -0.2 835,091 - PS417_03690 0.73 +0.3 835,091 - PS417_03690 0.73 -0.0 835,091 - PS417_03690 0.73 +0.5 835,091 - PS417_03690 0.73 +0.0 835,092 + PS417_03690 0.73 -0.0 835,092 + PS417_03690 0.73 -1.1 835,093 - PS417_03690 0.73 +0.5 835,093 - PS417_03690 0.73 +0.8 835,330 + +0.9 835,336 + +1.3 835,336 + +0.1 835,336 + +2.7 835,337 - +1.7 836,370 + -1.1 836,370 + -0.6 836,371 - -1.1 836,506 + +0.1 836,577 + +0.8 836,577 + +0.9 836,577 + +0.2 836,581 - -0.5 836,640 + +0.1 836,640 + +0.3 836,640 + +0.6 836,719 - PS417_03700 0.11 -1.7 836,719 - PS417_03700 0.11 -2.0 836,868 + PS417_03700 0.18 -0.0 836,869 - PS417_03700 0.18 -0.1 836,869 - PS417_03700 0.18 -1.1 836,903 + PS417_03700 0.19 -1.9 836,903 + PS417_03700 0.19 +0.8 836,904 - PS417_03700 0.19 -0.1 836,904 - PS417_03700 0.19 +1.1 836,991 - PS417_03700 0.24 -0.3
Or see this region's nucleotide sequence